August 2002 - Ifeffit - millenia.cars.aps.anl.gov

Re: ifeffit and perl 5.8.0
by Carlo U. Segre 01 Aug '02

01 Aug '02

I am still using Atoms beta5 myself because I have not been successful in getting beta6 to compile. I just hadn't gotten around to figuring out if it was me or a real problem. Carlo On Thu, 1 Aug 2002, Dr. Paul Fons wrote: > > > I have now gotten perl 5.8.0 to work with both athena and artemis. As > Carlo said in an earlier message, the binaries of 5.6 and 5.8 are not > compatible and it necessitates rebuilding compiled packages. There is > an OS X problem as well in that the make install command for perl 5.8 > doesn't seem to overwrite all of the files so I manually deleted the old > installation and did a make install in the perl 5.8 directory. The > weird thing is that only tkatoms (B6) doesn't recompile. I can't even > do a perl Makefile.PL without getting an error. Any ideas? > > > Here is a clip: > > perl -v > This is perl, v5.8.0 built for darwin > ... > > > [etld1220:~/Ports/Atoms-3.0beta6] paulfons% perl Makefile.PL > dyld: perl Undefined symbols: > _Perl_safefree > _Perl_safemalloc > _Perl_saferealloc > _Perl_sv_2pv > _perl_call_sv > _perl_eval_sv > _perl_get_sv > > -- Carlo U. Segre -- Professor of Physics Illinois Institute of Technology Voice: 312.567.3498 Fax: 312.567.3494 Carlo.Segre(a)iit.edu http://www.iit.edu/~segre

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Re: Ifeffit digest, Vol 1 #42 - 1 msg
by Raul Barrea 01 Aug '02

01 Aug '02

Hi Bruce, I've downloaded the exec file you've posted in your web site. Atoms and the periodic table work fine but Athena and Artemis don't work. Maybe there is something missing. Are the dll's the same for the old and new versions of the exec files? Thanks Raul Barrea BioCAT/APS ----- Original Message ----- From: <ifeffit-request(a)millenia.cars.aps.anl.gov> To: <ifeffit(a)millenia.cars.aps.anl.gov> Sent: Tuesday, July 23, 2002 12:01 PM Subject: Ifeffit digest, Vol 1 #42 - 1 msg > Send Ifeffit mailing list submissions to > ifeffit(a)millenia.cars.aps.anl.gov > > To subscribe or unsubscribe via the World Wide Web, visit > http://millenia.cars.aps.anl.gov/mailman/listinfo/ifeffit > or, via email, send a message with subject or body 'help' to > ifeffit-request(a)millenia.cars.aps.anl.gov > > You can reach the person managing the list at > ifeffit-admin(a)millenia.cars.aps.anl.gov > > When replying, please edit your Subject line so it is more specific > than "Re: Contents of Ifeffit digest..." > > > Today's Topics: > > 1. serious athena bug fix (Bruce Ravel) > > --__--__-- > > Message: 1 > Date: Mon, 22 Jul 2002 18:15:24 -0400 > To: ifeffit mailing list <ifeffit(a)millenia.cars.aps.anl.gov> > Reply-To: ravel(a)phys.washington.edu > From: Bruce Ravel <ravel(a)phys.washington.edu> > Subject: [Ifeffit] serious athena bug fix > > > Hi folks, > > Today Shelly Kelly pointed out a serious bug in the code that merges > spectra. Spectra merged as mu(E) or norm(E) have not ever been > calculated correctly. There were several problems -- the worst was > that the e0 shifts for all groups involved in the merge were ignored. > This resulted in numerous problems with the merged spectra. > > I think I have fixed the problem -- at least the sample data that > Shelly gave me now gets merged correctly. There is a new source > tarball on my web site. > > I also added a couple of trivial features to both athena and artemis. > The first is a splash-screen, i.e. something to look at in those > endless seconds between double clicking on the icon and having the > program spring to life on the screen. I also added several keyboard > shortcuts for common tasks in both programs. You can see what these > are by examining the menus in the menubar. > > > I also added something new to my web site. Athena and Artemis change > much faster than Ifeffit these days. The bad part of this is that > Windows users don't get to take advantage of my updates as often as > unix and OSX users. So today I added a section to the downloads page > with links to the executables of my four programs. I doubt I will > update the executables as often as I update the source tarballs. But > when I do, I'll post the executables on the downloads page. > > The idea of these individual executables is that you replace the > executable in the C:\Program Files\Ifeffit\ folder with the new one. > These executables now found on my downloads WILL NOT RUN CORRECTLY > outside the context of a properly installed ifeffit package. But if > you have installed Ifeffit using the installer from Matt's web page, > you will be able to drop my new executables in place. > > Regards, > B > > > > -- > Bruce Ravel ----------------------------------- ravel(a)phys.washington.edu > Code 6134, Building 3, Room 222 > Naval Research Laboratory phone: (1) 202 767 5947 > Washington DC 20375, USA fax: (1) 202 767 1697 > > NRL Synchrotron Radiation Consortium (NRL-SRC) > Beamlines X11a, X11b, X23b, X24c, U4b > National Synchrotron Light Source > Brookhaven National Laboratory, Upton, NY 11973 > > My homepage: http://feff.phys.washington.edu/~ravel > EXAFS software: http://feff.phys.washington.edu/~ravel/software/exafs/ > > > --__--__-- > > _______________________________________________ > Ifeffit mailing list > Ifeffit(a)millenia.cars.aps.anl.gov > http://millenia.cars.aps.anl.gov/mailman/listinfo/ifeffit > > > End of Ifeffit Digest

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Perl 5.8 and ifeffit
by Dr. Paul Fons 01 Aug '02

01 Aug '02

I have now gotten perl 5.8.0 to work with both athena and artemis. As Carlo said in an earlier message, the binaries of 5.6 and 5.8 are not compatible and it necessitates rebuilding compiled packages. There is an OS X problem as well in that the make install command for perl 5.8 doesn't seem to overwrite all of the files so I manually deleted the old installation and did a make install in the perl 5.8 directory. The weird thing is that only tkatoms (B6) doesn't recompile. I can't even do a perl Makefile.PL without getting an error. Any ideas? Here is a clip: perl -v This is perl, v5.8.0 built for darwin .... [etld1220:~/Ports/Atoms-3.0beta6] paulfons% perl Makefile.PL dyld: perl Undefined symbols: _Perl_safefree _Perl_safemalloc _Perl_saferealloc _Perl_sv_2pv _perl_call_sv _perl_eval_sv _perl_get_sv Dr. Paul Fons Photonics Research Institute National Institute for Advanced Industrial Science and Technology Ministry of Economics and Trade Umezono 1-1-1 Tsukuba, Japan 305-8568 tel. 81-298-61-5636 fax. 81-298-61-5615 paul-fons(a)aist.go.jp Lines below are in Japanese 独立行政法人産業技術総合研究所光技術部門〒305-8568 茨城県つくば市梅園1-1-1 産総研つくば中央第2 E-mail: paul-fons(a)aist.go.jp, Tel. 0298-61-5636, Fax. 0298-61-5615

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