- Ifeffit - millenia.cars.aps.anl.gov

APS/IIT EXAFS Summer School
by Carlo Segre 19 May '21

19 May '21

Hello All: I am attaching the announcement for the 2021 APS/IIT EXAFS Summer School which will be held virtually this year from August 1-4, 2021. Please see the attached for more detail. To register, please send email to Grant Bunker <bunker(a)iit.edu> Carlo -- Carlo U. Segre -- Duchossois Leadership Professor of Physics Professor of Materials Science & Engineering Director, Center for Synchrotron Radiation Research and Instrumentation Illinois Institute of Technology Voice: 312.567.3498 Fax: 312.567.3494 segre(a)iit.edu http://phys.iit.edu/~segre segre(a)debian.org

1 0

IMP: Inquiry for a postdoc position
by Nirmalendu Patra 18 May '21

18 May '21

Dear XAS group Members, I apologize in advance for spamming everyone with this posting. I am Nirmalendu Patra (Ph.D). I have been working as a postdoc in Dr. Simon R. Bare’s group at Stanford Synchrotron Radiation Light Source (SSRL), SLAC National Accelerator Laboratory, California, USA since June of 2020. My current role in the group is to support the team effort to broaden the experimental capabilities by conducting the in-situ XAS (XANES / EXAFS) experimental plan, data acquisition and analysis using IFEFFIT software package (Athena and Artemis) and finally preparing the manuscript. I am also working on the Principal component analysis (PCA) and clustering using TXM XANES Wizard to visualize the unidentified chemical species and the pattern in a large dataset. Before my current postdoc position, I graduated with a Ph.D. in Physics, working on the X-ray Absorption Spectroscopy studies on magnetic thin films and bulk materials at the Indus-2 Synchrotron, RRCAT, Indore, India under the guidance of Dr. Dibyendu Bhattacharyya, BARC, Mumbai, India. The title of my thesis was “Investigation on local structures of various thin film Heusler alloys by XAS and XMCD measurements”. The main objective of my thesis study the local atomic structure, surface morphology and elemental composition of the PLD deposited Heusler alloy thin ﬁlms and correlate their atomic structure with their magnetic properties. My postdoctoral fellowship with Dr. Bare is ending on June 25th, 2021. I am looking for a new postdoctoral position that will enable me to study materials for energy conversion and storage. I am also interested in studying electronic, structural, physio-chemical properties and morphology of materials using advanced spectroscopy techniques. XAS study on metallic alloys or metal oxide thin ﬁlms for spintronic applications are also a part of my research interest. My resume is attached here, and more details can be found from my LinkedIn profile (www.linkedin.com/in/nirmalendu-patra-82701365) If any group has an opening for a postdoc position, kindly respond to my email. Because of the COVID situation in India, I don't want to return now. So trying hard to find a new position. I am available for hiring and will appreciate your help to find a postdoc position. Thank you. With kind regards, *Nirmalendu Patra*

1 0

Illinois Tech Synchrotron Radiation Course
by Carlo Segre 09 May '21

09 May '21

Hello All: Illinois Tech is offering the graduate Introduction to Synchrotron Radiation course once again in Fall 2021. Please see the attached course summary. The course is offered online and it is very straightforward to apply as a non-degree graduate student as late as the second week of classes in September. The online course will be a one (1) credit course instead of the three (3) credits taken by degree-seeking Illinois Tech students. If you are interested or have interested students please contact me for more details on the course or how to apply and register. Cheers, Carlo -- Carlo U. Segre -- Duchossois Leadership Professor of Physics Professor of Materials Science & Engineering Director, Center for Synchrotron Radiation Research and Instrumentation Illinois Institute of Technology Voice: 312.567.3498 Fax: 312.567.3494 segre(a)iit.edu http://phys.iit.edu/~segre segre(a)debian.org

2 1

Postdoc positon in synchrotron characterization of lithium-ion batteries available at SOLEIL
by BELIN Stephanie 06 May '21

06 May '21

Dear All, I would like to share information about one funded Postdoc positions at SOLEIL synchrotron. We are looking for a Postdoc candidate on advanced synchrotron characterization of lithium-ion batteries within the framework of the Battery Interface Genome Materials Accelerated Platform (BIG-MAP<http://www.big-map.eu>, www.big-map.eu<http://www.big-map.eu>). The Postdoc position is dedicated to the development of versatile electrochemical cells and set-ups for operando experiments using spectroscopic and scattering techniques such as synchrotron X-ray absorption spectroscopy (XAS), X-ray emission spectroscopy (XES), X-ray diffraction (XRD), and small-angle X-ray scattering (SAXS), combined with conventional laboratory techniques, such as Raman scattering. Please find the advertisement in the attachment. https://www.synchrotron-soleil.fr/en/job-offers/post-doctoral-position-adva… Please pass on to suitable candidates you are aware of and disseminate to relevant networks! Thank you for your help. With kind regards, Stéphanie &&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&& Dr Stéphanie BELIN ROCK beamline scientist tel. (0033) 01 69 35 96 45 ROCK (0033) 01 69 35 81 46 Fax (0033) 01 69 35 94 57 Email : stephanie.belin(a)synchrotron-soleil.fr<mailto:stephanie.belin@synchrotron-soleil.fr> Synchrotron SOLEIL - Division Expériences L'orme des Merisiers - Saint Aubin BP48 91192 GIF sur YVETTE [cid:image002.png@01D105CE.75C2FD50] http://www.synchrotron-soleil.fr<http://www.synchrotron-soleil.fr/> &&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&

1 0

millenia.cars.aps.anl.gov outage starting April 29
by Matt Newville 29 Apr '21

29 Apr '21

Hi Folks, The server millenia.cars.aps.anl.gov that hosts this mailing list and related services including Webatoms and the binary installers for Larch will be offline due to a planned power outage at the APS. We'll gracefully shut down this server on the afternoon (Chicago time) of April 29th, a bit more than 24 hours from now. The estimate for restoring power is May 4th, but it is possible that the outage will go for another day or so. During that time, any messages sent to this list are likely to be lost. In the meantime, please do consider submitting an abstract for the Virtual XAFS Conference! --Matt PS: if you need to contact me directly by email that will (or should) still work during the APS power outage.

2 1

Larch 0.9.51
by Matt Newville 27 Apr '21

27 Apr '21

Hi Folks, Larch 0.9.51 is now available for download and use. It's been several months since the last release, and there have been some important improvements to XAFS data processing and to the XAS Viewer application: - Parameters saved in an Athena Project File are now correctly saved and read into XAS Viewer (thanks Tyler Valentine!) - There is now a simple "Apply to all marked groups" feature for pre-edge peak fitting. That is, you can define a pre-edge peak model with one data set and then apply it to many others, either inspecting the individual fits or saving a CSV file with all the parameters and uncertainties for each fit to each data set. - XAS Viewer can now import multiple scans from a Spec file (thanks Mauro Rovezzi for help with this). It may seem that Specfiles are "legacy", but the reader should also be able to handle the ESRF Bliss HDF5 files (as read in with the silx package, from ESRF), which is their way of efficiently stacking multiple scans into a single binary file. While support for this here should be considered "beta" (or maybe "alpha"!), it is also reasonable to expect that this or a similar HDF5 format file will become a common way to collect and store XAFS data. - There are binary installers for Windows, MacOSX, and Linux. There are also now "GetLarch.sh" and "GetLarch.bat" scripts (that are very short) that can be run to do the download and install, essentially mimicking what the binary installer does. This may be useful for folks wanting to install Larch on multi-user servers or in existing (or "other") Python environments. This might also be useful for those who run into permissions issues, especially on MacOS, where installing a package from an untrusted source is often blocked by default. With the installer script, the unprivileged user is simply running a script that downloads a bunch of files and places them in the home folder. These scripts might also be useful for those who run into problems downloading very large files from millenia.cars.aps.anl.gov, as the installer scripts will use Anaconda and PyPI resources that are better distributed throughout the world. ... which brings me to a final note (I'll send out another message next week): The APS will have a planned power outage from April 30 to May 4 . This will take millenia.cars.aps.anl.gov off-line for those 5 +/- 1 days. That machine hosts the binary installers and also this mailing list. Mail sent to this list during that time will likely be lost (email routing servers can handle destination servers being down for a few hours, but not days). So, if you're planning on sending announcements here, either do it before April 29 or wait until May 5. If you have any questions, problems, or suggestions, please let me know. --Matt

2 2

Fourier transform parameters not saved in Larch XAS Viewer
by Tyler Valentine 19 Apr '21

19 Apr '21

Hello, I am using Larch XAS Viewer. I noticed that when I save my work to an Athena project file (.prj) and reopen it later, the Fourier transform parameters are reset. It seems to be correctly saving other values that I set such as the pre-edge and normalization ranges, so I am unsure why it does not also save the transform parameters. Is it possible to have these values saved? Thank you, Tyler

2 1

XAFS 2021 Virtual Conference deadlines
by Matt Newville 19 Apr '21

19 Apr '21

Hi Folks, I hope most of you have seen information about the 2021 Virtual XAFS Conference this summer: https://xafs2021.org/ There will be an in-person conference in the summer of 2022 in Sydney and a briefer, virtual conference this summer: 11-13 July 2021. I especially want to draw your attention to the Virtual Poster session for students and early-career scientists. The abstract deadline is 1 May, a little less than two weeks from now: see https://xafs2021.org/call-for-abstracts.php for details. Please consider submitting a poster or encouraging your colleagues to do so. There will also be a Virtual Workshop on Data Analysis with Larch: I'll be pre-recording lectures, and then going over some of the finer details of using XAS Viewer and doing simple XAFS analysis during the workshop. Hope to see you there, --Matt Newville <newville at cars.uchicago.edu> 630-327-7411

1 0

Looking for the XAS of Zn3P2
by Madeleine Han 16 Apr '21

16 Apr '21

Dear Ifeffit community, I am looking for the X-ray absorption spectrum of Zn3P2 to use as a reference to determine the composition of an unknown compound. Does anyone know if it has already been recorded? If so, where can I find it? Thank you in advance for your help, Yours sincerely Madeleine Han

2 1

Re: [Ifeffit] Artemis fit error - chi-square and R-factors are always equal to 0
by Ava Rajh 27 Mar '21

27 Mar '21

HI, I hope I am replying to the thread correctly. Thank you for your insights, I have spent a lot of time tinkering with installation and I have a partial solution. To first answer your questions: - yes, the fit ran ok and comparing it to the same fit using ifeffit (done by a a machine using ifeffit that works correctly), the calculated parameters are almost the same, with slight differences of 10-5 order of magnitude. The plot after the fit also looks fine. -the log I attached was from the example Cu data set, but the issue happens on every fit I try to run. -I'm not sure about the feff.dat file used, I haven't been able to locate it in my installation. - Feff6 (or Feff6l if I set it in preferences) are able to run as far as I can tell -I have run the example larch scripts to which you pointed me, and most of them were able to run ok, with no obvious issues (the parameters looked ok and reduced chi-square and R vales were reported). There was an error in running a few of the tests something to do with PlotDisplay, but I'm pretty sure these aren't related issues. To me, all of this points to some trouble Artemis has communicating with larch. I have tried downgrading the installation from 0.9.50 (that installs with pip) to 0.9.49 (that the website says is the current) and an even older ones but no luck. The solution war disappointingly trivial: If I completely removed larch and demeter suite along with everything else I installed in the last few days, from my computer and tried to compile it again, this time with ifeffit, I finally managed to get the reduced-chi square and R values. I have no idea why it didn't work when I tried it a few times before before but now I am able to get the fit and all required parameters. It still doesn't work with larch, but for now, at least I'm able to get the results. I'll re-install Larch and tinker with it a bit more to try to figure out where the error was coming from and report back if I find anything that might help someone else facing the same issue. Thanks again for the help Best, Ava

1 0