Re: [Ifeffit] Ifeffit Digest, Vol 51, Issue 26
I guess the problem lies in the different "end line character" for Linux and Windows. Before you load "dos style"(Windows use it) apj file, you should translate it into "Linux style". It is easy in Linux system by using "dos2unix". On 5/30/07, ifeffit-request@millenia.cars.aps.anl.gov < ifeffit-request@millenia.cars.aps.anl.gov> wrote:
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Today's Topics:
1. Using windows apj files on linux (joshua jason kas)
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Message: 1 Date: Tue, 29 May 2007 10:13:06 -0700 (PDT) From: joshua jason kas
Subject: [Ifeffit] Using windows apj files on linux To: ifeffit@millenia.cars.aps.anl.gov Message-ID: Content-Type: text/plain; charset="us-ascii" Hi, I recently updated to redhat 4. I am running: artemis 0.8.009 IFEFFIT 1.2.9 Tk-804.027 perl 5.8.5
I have an artemis project file that I started on my win xp machine and would like to use on the linux machine. When I open the apj file on linux, some of the information about the fits seems to be scrambled. Here are some of the symptoms.
1) The raw logs seem to have aquired the following escape character at the end of each line: \x{d} This shows up as a carriage return or end of line on this screen.
2) Quick summary of selected fits gives 0 for all reported values (chisq, rfactor, nidp, etc) and does not report any guessed parameters.
Here is one of the quick summaries. Note that the \x{d} do not show up here, but they do in the artemis message palette. I am also attatching the project file. Thanks for any help, Josh Kas
Project title : Fitting pt1_amine_165_he_573.chi
Comment : fer dw, constant delr, ei=0, kw=1, kmin=2.0, rmin=1.2
Figure of merit : 17
Fitting statistics Number of independent points : 0 Number of variables : 0 Chi-square : 0 Reduced chi-square : 0 R-factor : 0 Measurement uncertainty (k) : 0 Measurement uncertainty (R) : 0
Guess parameters
=*==*==*==*==*==*==*==*==*==*==*==*==*==*==*==*==*==*==*==*=
On Wednesday 30 May 2007, Jun Lin wrote:
Before you load "dos style"(Windows use it) apj file, you should translate it into "Linux style". It is easy in Linux system by using "dos2unix".
That's not a very good idea. The "apj" file is actually a normal zip file. If you run it through dos2unix or something similar, it will almost certainly become irretrievably corrupted. You could unzip the apj file, run the text files through dos2unix (but not every file inside is a text file!), zip it back up and then fire up Artemis. But that seems way more inconvenient than just hitting the big green button when you first open the project on a unix machine. B -- Bruce Ravel ---------------------------------------------- bravel@anl.gov Molecular Environmental Science Group, Building 203, Room E-165 MRCAT, Sector 10, Advance Photon Source, Building 433, Room B007 Argonne National Laboratory phone and voice mail: (1) 630 252 5033 Argonne IL 60439, USA fax: (1) 630 252 9793 My homepage: http://cars9.uchicago.edu/~ravel EXAFS software: http://cars9.uchicago.edu/~ravel/software/
participants (2)
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Bruce Ravel
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Jun Lin