re Athena: Target transform function not working
Dear Bruce, Following the instructions you gave John Hayes, I tried installing this fix on both a windows XP and Windows 7 machine today. Installing the PCA.pm file in the strawberry\perl\site\lib\Demeter folder seems to result in the crashing Athena when the pca tab is selected. I initially replaced both PCA.pm files and crashed the program then replaced one at a time and it is this file which causes the crash. Looking at github I see it was last changed yesterday I think, so suspect you may have altered it recently in a less than perfect manner. Log file attached. Thanks Fred -- This e-mail and any attachments may contain confidential, copyright and or privileged material, and are for the use of the intended addressee only. If you are not the intended addressee or an authorised recipient of the addressee please notify us of receipt by returning the e-mail and do not use, copy, retain, distribute or disclose the information in or attached to the e-mail. Any opinions expressed within this e-mail are those of the individual and not necessarily of Diamond Light Source Ltd. Diamond Light Source Ltd. cannot guarantee that this e-mail or any attachments are free from viruses and we cannot accept liability for any damage which you may sustain as a result of software viruses which may be transmitted in or with the message. Diamond Light Source Limited (company no. 4375679). Registered in England and Wales with its registered office at Diamond House, Harwell Science and Innovation Campus, Didcot, Oxfordshire, OX11 0DE, United Kingdom
Thanks Fred. I'll try to look at it this weekend. B Bruce Ravel ------------------------------------ bravel@bnl.gov National Institute of Standards and Technology Synchrotron Methods Group at NSLS --- Beamlines U7A, X24A, X23A2 Building 535A Upton NY, 11973 Homepage: http://xafs.org/BruceRavel Software: https://github.com/bruceravel ________________________________ From: ifeffit-bounces@millenia.cars.aps.anl.gov [ifeffit-bounces@millenia.cars.aps.anl.gov] on behalf of fred.mosselmans@diamond.ac.uk [fred.mosselmans@diamond.ac.uk] Sent: Friday, November 01, 2013 9:52 AM To: ifeffit@millenia.cars.aps.anl.gov Subject: [Ifeffit] re Athena: Target transform function not working Dear Bruce, Following the instructions you gave John Hayes, I tried installing this fix on both a windows XP and Windows 7 machine today. Installing the PCA.pm file in the strawberry\perl\site\lib\Demeter folder seems to result in the crashing Athena when the pca tab is selected. I initially replaced both PCA.pm files and crashed the program then replaced one at a time and it is this file which causes the crash. Looking at github I see it was last changed yesterday I think, so suspect you may have altered it recently in a less than perfect manner. Log file attached. Thanks Fred -- This e-mail and any attachments may contain confidential, copyright and or privileged material, and are for the use of the intended addressee only. If you are not the intended addressee or an authorised recipient of the addressee please notify us of receipt by returning the e-mail and do not use, copy, retain, distribute or disclose the information in or attached to the e-mail. Any opinions expressed within this e-mail are those of the individual and not necessarily of Diamond Light Source Ltd. Diamond Light Source Ltd. cannot guarantee that this e-mail or any attachments are free from viruses and we cannot accept liability for any damage which you may sustain as a result of software viruses which may be transmitted in or with the message. Diamond Light Source Limited (company no. 4375679). Registered in England and Wales with its registered office at Diamond House, Harwell Science and Innovation Campus, Didcot, Oxfordshire, OX11 0DE, United Kingdom
Dear Friends, I have some EXAFS measurements on PtO/ metaloxides (supported platinum oxides) but I do not PtO as standard sample for local structure determination. If there are people that have this standard(s) please send me. Thanking in advance, Nick Aldea ******************************************************* * Dr. Nicolae L. Aldea * * National Institute for Research and Development * * for Isotopic and Molecular Technologies * * Donath Street 65-103, P. O. Box 700 * * 400293 Cluj-Napoca, Romania * * E-mail: naldea@itim-cj.ro * * Details: http://L30.itim-cj.ro/~naldea/index.htm * * Mobile 40 742 153336 * *******************************************************
Dear Friends,
I have some EXAFS measurements on PtO/ metaloxides (supported platinum oxides) but I do not PtO as standard sample for local structure determination. If there are people that have this standard(s) please send me. Thanking in advance, Nick Aldea
******************************************************* * Dr. Nicolae L. Aldea * * National Institute for Research and Development * * for Isotopic and Molecular Technologies * * Donath Street 65-103, P. O. Box 700 * * 400293 Cluj-Napoca, Romania * * E-mail: naldea@itim-cj.ro * * Details: http://L30.itim-cj.ro/~naldea/index.htm * * Mobile 40 742 153336 * *******************************************************
On 11/03/2013 11:26 AM, Nicolae L. Aldea wrote:
I have some EXAFS measurements on PtO/ metaloxides (supported platinum oxides) but I do not PtO as standard sample for local structure determination. If there are people that have this standard(s) please send me.
Nicolae, I found the attached in the Lytle database. I have no idea as to its provenance or quality. I have no idea how the sample was prepared or where the sample was measured (presumably at Stanford). The header states that the data are PtO at room temperature. Use this with caution! The attached file has converted the quirky file from the Lytle database into something a bit less weird. Energy is the first column, mu(E) is the second column. B -- Bruce Ravel ------------------------------------ bravel@bnl.gov National Institute of Standards and Technology Synchrotron Science Group at NSLS --- Beamlines U7A, X24A, X23A2 Building 535A Upton NY, 11973 Homepage: http://xafs.org/BruceRavel Software: https://github.com/bruceravel
On 11/01/2013 09:52 AM, fred.mosselmans@diamond.ac.uk wrote:
Following the instructions you gave John Hayes, I tried installing this fix on both a windows XP and Windows 7 machine today.
Installing the PCA.pm file in the strawberry\perl\site\lib\Demeter folder seems to result in the crashing Athena when the pca tab is selected.
I initially replaced both PCA.pm files and crashed the program then replaced one at a time and it is this file which causes the crash.
Looking at github I see it was last changed yesterday I think, so suspect you may have altered it recently in a less than perfect manner.
Hi Fred (and everyone else who has been asking about the target transform in Athena's PCA tool), The instructions I gave to John will no longer work. In solving one of the problems George Strbinsky reported recently, I had to make a rather sweeping change to the Demeter code base that precludes using the sort of solution I suggested to John. This means that the target transform will remain broken until I can make a new update to the Windows package. The bad news is that I am about to go on travel, so I will not have an opportunity to make an updater until the week of Nov 18th at the earliest. The good news is that I have fixed the problem. Those who update from github (linux users, for example, or Windows users who know how to use git) can have the solution right now. Sorry for the delay, B -- Bruce Ravel ------------------------------------ bravel@bnl.gov National Institute of Standards and Technology Synchrotron Science Group at NSLS --- Beamlines U7A, X24A, X23A2 Building 535A Upton NY, 11973 Homepage: http://xafs.org/BruceRavel Software: https://github.com/bruceravel
Dear Bruce, The PCA fitting marked groups on Athena seems to have a problem in windows. Using your teaching example if you highlight several (e.g. 3 spectra ) and try to fit them to some standard using the fit marked group button the programme does some LCF fitting and then seems to be about to report the results but instead crashes. I have tried this on both windows xp and windows 7 platforms with the same results. Individual spectrum fitting works fine. Log file attached Thanks Fred -- This e-mail and any attachments may contain confidential, copyright and or privileged material, and are for the use of the intended addressee only. If you are not the intended addressee or an authorised recipient of the addressee please notify us of receipt by returning the e-mail and do not use, copy, retain, distribute or disclose the information in or attached to the e-mail. Any opinions expressed within this e-mail are those of the individual and not necessarily of Diamond Light Source Ltd. Diamond Light Source Ltd. cannot guarantee that this e-mail or any attachments are free from viruses and we cannot accept liability for any damage which you may sustain as a result of software viruses which may be transmitted in or with the message. Diamond Light Source Limited (company no. 4375679). Registered in England and Wales with its registered office at Diamond House, Harwell Science and Innovation Campus, Didcot, Oxfordshire, OX11 0DE, United Kingdom
Thanks as always for the bug report, Fred. I am on travel right now, but I am hoping to make a new release in the next few weeks. I will put this on the to do list. The work-around is, as I am sure you know, rather obvious. You'll have to do the fits one-by-one. B Bruce Ravel ------------------------------------ bravel@bnl.gov National Institute of Standards and Technology Synchrotron Methods Group at NSLS --- Beamlines U7A, X24A, X23A2 Building 535A Upton NY, 11973 Homepage: http://xafs.org/BruceRavel Software: https://github.com/bruceravel ________________________________ From: ifeffit-bounces@millenia.cars.aps.anl.gov [ifeffit-bounces@millenia.cars.aps.anl.gov] on behalf of fred.mosselmans@diamond.ac.uk [fred.mosselmans@diamond.ac.uk] Sent: Saturday, November 09, 2013 6:49 AM To: ifeffit@millenia.cars.aps.anl.gov Subject: [Ifeffit] LCF fitting marked groups in Athena Dear Bruce, The PCA fitting marked groups on Athena seems to have a problem in windows. Using your teaching example if you highlight several (e.g. 3 spectra ) and try to fit them to some standard using the fit marked group button the programme does some LCF fitting and then seems to be about to report the results but instead crashes. I have tried this on both windows xp and windows 7 platforms with the same results. Individual spectrum fitting works fine. Log file attached Thanks Fred -- This e-mail and any attachments may contain confidential, copyright and or privileged material, and are for the use of the intended addressee only. If you are not the intended addressee or an authorised recipient of the addressee please notify us of receipt by returning the e-mail and do not use, copy, retain, distribute or disclose the information in or attached to the e-mail. Any opinions expressed within this e-mail are those of the individual and not necessarily of Diamond Light Source Ltd. Diamond Light Source Ltd. cannot guarantee that this e-mail or any attachments are free from viruses and we cannot accept liability for any damage which you may sustain as a result of software viruses which may be transmitted in or with the message. Diamond Light Source Limited (company no. 4375679). Registered in England and Wales with its registered office at Diamond House, Harwell Science and Innovation Campus, Didcot, Oxfordshire, OX11 0DE, United Kingdom
participants (4)
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Bruce Ravel -
fred.mosselmans＠diamond.ac.uk -
Nicolae L. Aldea -
Ravel, Bruce