Dear George,
I'm afraid that you've uncovered a silly and known problem. (See https://trac.macports.org/ticket/48517 )
This bug is fixed in principle but not committed to the MacPorts repository. Last week there was some activity on this. Unfortunately, we'll need a MacPorts person with the right privileges to commit this change. I don't know how to push this forward.
If you are a MacPorts expert, then you can certainly grab the patch found at that ticket and apply it. I'm afraid that's something that I don't know how to do without an hour of research, though.
I'm sorry about that, but we might have to be patient. I will investigate how one pushes the MacPorts committer group to commit their changes. Or, I mean, other people's changes.
Joe
________________________________
From: George Sterbinsky
Sent: Tuesday, August 11, 2015 8:27 PM
To: XAFS Analysis using Ifeffit
Subject: Re: [Ifeffit] MacPorts now contains Demeter 0.9.22 (and requires Perl 5.22)
Hi Joe,
Thanks for updating the package! I tried updating, first running "sudo port selfupdate" and then "sudo port update demeter-devel". I get the following error when I try the latter command:
bash-3.2$ sudo port upgrade demeter-devel
Password:
---> Computing dependencies for ifeffit
---> Verifying checksums for ifeffit
Error: Checksum (rmd160) mismatch for 1.2.final.tar.gz
Error: Checksum (sha256) mismatch for 1.2.final.tar.gz
Error: org.macports.checksum for port ifeffit returned: Unable to verify file checksums
Please see the log file for port ifeffit for details:
/opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_ifeffit/ifeffit/main.log
Error: Unable to upgrade port: 1
To report a bug, follow the instructions in the guide:
http://guide.macports.org/#project.tickets
bash-3.2$
I've attached the log file as well. Any suggestions as to what else I might try?
Thank you,
George
On Tue, Aug 11, 2015 at 3:49 PM, Fowler, Joseph W. mailto:joe.fowler@nist.gov> wrote:
Dear Bruce:
Wait a minute! In fact, I updated the Mac Ports package demeter within the last two weeks to use Demeter version 0.9.22. Mac users might want to use the latest version and should consider doing a "port self update && port upgrade demeter".
Users who installed the development version port called demeter-devel will also land on 0.9.22 if they upgrade to the latest.
Note that the latest Mac Ports version is known as 0.9.22_1, where the revision number _1 corresponds to the upgrade from Perl 5.16 to 5.22 (which the MacPorts team is pushing on). For many users, there will be numerous dependency upgrades when you upgrade to 0.9.22_1, but I found they took only a few minutes in my particular case. This change in Perl versions could conceivably cause problems, but I haven't heard of any.
Best wishes,
Joe Fowler
(MacPorts maintainer for demeter)
________________________________
From: Bruce Ravel mailto:bravel@bnl.gov>
Sent: Tuesday, August 11, 2015 6:55 AM
To: XAFS Analysis using Ifeffit
Subject: Re: [Ifeffit] Energy shift after deglitch
I don't see the behavior you describe when I follow your recipe.
Perhaps it got fixed when I fixed this fellow's issue...?
http://millenia.cars.aps.anl.gov/pipermail/ifeffit/2015-May/012496.html
Of course, the Mac package is a fair bit behind at this point.
B
On 08/06/2015 06:10 PM, George Sterbinsky wrote:
Hello,
I am writing to report a bug in Athena running on OSX 10.10.4. Here are
the steps to reproduce the problem. I'm not sure that all steps are
necessary.
1. Open Athena and import the attached project, which contains two
groups that are both marked.
2. Change plot range to plot from -30 to 30 eV.
3. Select the "deglitch and truncate" window.
4. Select group "Ref data.merge".
5. In deglitch many points, set margin to 0.05, Emin to -24, and Emax to
-20.
6. Click replot margins.
7. Click remove points.
8. Click return to main window.
9. Click the derivative check box to plot marked groups as normalized
derivative.
10. Click mu(E) button to plot marked groups as derivative of mu(E).
When the last step is done the groups appear to shift with respect to
each other. One can switch between Normalized and mu(E) and see the
shift come and go.
Thank you,
George
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--
Bruce Ravel ------------------------------------ bravel@bnl.govmailto:bravel@bnl.gov
National Institute of Standards and Technology
Synchrotron Science Group at NSLS-II
Building 535A
Upton NY, 11973
Homepage: http://bruceravel.github.io/home/
Software: https://github.com/bruceravel
Demeter: http://bruceravel.github.io/demeter/
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