[Ifeffit] Trouble installing demeter on Mint 17.1
Stevan Ognjanovic
stevan.ognjanovic at uni-due.de
Wed Feb 18 11:43:34 CST 2015
Dear Bruce,
First of all, thank you for your response.
I did not update Mint, I installed a fresh version (formated the drive,
installed a new version, remounted my data partitions, including the
home folder, and reinstalled all the packages from the repositories),
sorry if I did not make it clear enough in the first email. The demeter
folder in the home folder was carried over from the old linux version,
but I downloaded the newest version from the github repo. I would think
this is basically equal to starting with a blank OS. Anyway, I did try
the ./Build touch_wrapper command without any success (same tests failed
if I remember correctly).
As you asked me about athena crashing, for the purpose of testing it, I
went on and installed athena despite the errors in the ./Build test
command (without downloading the new version from the github repo). This
is the terminal output:
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Attribute (bkg_nc0) does not pass the type constraint because:
Validation failed for 'LaxNum' with value 0,34568900723742 at
accessor Demeter::Data::bkg_nc0 (defined at
/home/stevan/perl5/lib/perl5/x86_64-linux-gnu-thread-multi/Demeter/Data.pm
line 310) line 4
Demeter::Data::bkg_nc0('Demeter::Data=HASH(0xcf3fd70)',
'0,34568900723742') called at
/home/stevan/perl5/lib/perl5/x86_64-linux-gnu-thread-multi/Demeter/Data/Mu.pm
line 323
Demeter::Data::Mu::normalize('Demeter::Data=HASH(0xcf3fd70)')
called at
/home/stevan/perl5/lib/perl5/x86_64-linux-gnu-thread-multi/Demeter/Data.pm
line 717
Demeter::Data::_update('Demeter::Data=HASH(0xcf3fd70)', 'fft')
called at
/home/stevan/perl5/lib/perl5/x86_64-linux-gnu-thread-multi/Demeter/Data/Plot.pm
line 24
Demeter::Data::Plot::plot('Demeter::Data=HASH(0xcf3fd70)', 'E')
called at
/home/stevan/perl5/lib/perl5/x86_64-linux-gnu-thread-multi/Demeter/UI/Athena.pm
line 2177
Demeter::UI::Athena::plot('Demeter::UI::Athena=HASH(0x1a65618)', '',
'', 'E', 'single') called at
/home/stevan/perl5/lib/perl5/x86_64-linux-gnu-thread-multi/Demeter/UI/Athena.pm
line 2376
Demeter::UI::Athena::quadplot('Demeter::UI::Athena=HASH(0x1a65618)',
'Demeter::Data=HASH(0xcf3fd70)') called at
/home/stevan/perl5/lib/perl5/x86_64-linux-gnu-thread-multi/Demeter/UI/Athena/IO.pm
line 238
Demeter::UI::Athena::IO::Import_plot('Demeter::UI::Athena=HASH(0x1a65618)',
'Demeter::Data=HASH(0xcf3fd70)') called at
/home/stevan/perl5/lib/perl5/x86_64-linux-gnu-thread-multi/Demeter/UI/Athena/IO.pm
line 813
Demeter::UI::Athena::IO::_prj('Demeter::UI::Athena=HASH(0x1a65618)',
'/home/stevan/Documents/.../athenaprojectname.prj',
'/home/stevan/Documents/.../athenaprojectname.prj', 1, '') called at
/home/stevan/perl5/lib/perl5/x86_64-linux-gnu-thread-multi/Demeter/UI/Athena/IO.pm
line 164
Demeter::UI::Athena::IO::Import('Demeter::UI::Athena=HASH(0x1a65618)')
called at
/home/stevan/perl5/lib/perl5/x86_64-linux-gnu-thread-multi/Demeter/UI/Athena.pm
line 857
Demeter::UI::Athena::OnMenuClick('Wx::Frame=HASH(0x19a2980)',
'Wx::CommandEvent=SCALAR(0xcf2b6d0)',
'Demeter::UI::Athena=HASH(0x1a65618)') called at
/home/stevan/perl5/lib/perl5/x86_64-linux-gnu-thread-multi/Demeter/UI/Athena.pm
line 780
Demeter::UI::Athena::__ANON__('Wx::Frame=HASH(0x19a2980)',
'Wx::CommandEvent=SCALAR(0xcf2b6d0)') called at
/home/stevan/perl5/bin/dathena line 39
eval {...} at /home/stevan/perl5/bin/dathena line 39
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
After removing demeter and perl5 folders from the home directory,
downloading the latest packages from the github repo and building from
scratch, all test were successful in the ./Build test step. Demeter
installed without problems. But, athena still crashes when I try to open
a project or import any data. This is the terminal output (this time
after trying to import data in .dat format):
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Attribute (bkg_e0) does not pass the type constraint because:
Validation failed for 'LaxNum' with value 1582,00000 at accessor
Demeter::Data::bkg_e0 (defined at
/home/stevan/perl5/lib/perl5/x86_64-linux-gnu-thread-multi/Demeter/Data.pm
line 226) line 7
Demeter::Data::bkg_e0('Demeter::Data=HASH(0xe5ca148)',
'1582,00000') called at
/home/stevan/perl5/lib/perl5/x86_64-linux-gnu-thread-multi/Demeter/Data/E0.pm
line 67
Demeter::Data::E0::e0_ifeffit('Demeter::Data=HASH(0xe5ca148)')
called at
/home/stevan/perl5/lib/perl5/x86_64-linux-gnu-thread-multi/Demeter/Data/E0.pm
line 37
Demeter::Data::E0::e0('Demeter::Data=HASH(0xe5ca148)',
'ifeffit') called at
/home/stevan/perl5/lib/perl5/x86_64-linux-gnu-thread-multi/Demeter/Data/Mu.pm
line 289
Demeter::Data::Mu::initialize_e0('Demeter::Data=HASH(0xe5ca148)')
called at
/home/stevan/perl5/lib/perl5/x86_64-linux-gnu-thread-multi/Demeter/Data/Mu.pm
line 270
Demeter::Data::Mu::put_data('Demeter::Data=HASH(0xe5ca148)')
called at
/home/stevan/perl5/lib/perl5/x86_64-linux-gnu-thread-multi/Demeter/Data.pm
line 732
Demeter::Data::_update('Demeter::Data=HASH(0xe5ca148)', 'all')
called at
/home/stevan/perl5/lib/perl5/x86_64-linux-gnu-thread-multi/Demeter/UI/Athena/IO.pm
line 603
Demeter::UI::Athena::IO::_group('Demeter::UI::Athena=HASH(0x1d0d640)',
'Demeter::UI::Athena::ColumnSelection=HASH(0xe602810)',
'Demeter::Data=HASH(0xe5ca148)', 'HASH(0xe5c5f08)',
'/home/stevan/Documents/Project/Samples/XAFS/Samples-Canada/SO-58/Al-K/SO-58-XAS_1.dat',
'/home/stevan/Documents/Project/Samples/XAFS/Samples-Canada/SO-58/Al-K/SO-58-XAS_1.dat',
0, 0) called at
/home/stevan/perl5/lib/perl5/x86_64-linux-gnu-thread-multi/Demeter/UI/Athena/IO.pm
line 486
Demeter::UI::Athena::IO::_data('Demeter::UI::Athena=HASH(0x1d0d640)', '/home/stevan/Documents/Project/Samples/XAFS/Samples-Canada/SO-58/Al-K/SO-58-XAS_1.dat',
'/home/stevan/Documents/Project/Samples/XAFS/Samples-Canada/SO-58/Al-K/SO-58-XAS_1.dat',
1, 0) called at
/home/stevan/perl5/lib/perl5/x86_64-linux-gnu-thread-multi/Demeter/UI/Athena/IO.pm
line 165
Demeter::UI::Athena::IO::Import('Demeter::UI::Athena=HASH(0x1d0d640)')
called at
/home/stevan/perl5/lib/perl5/x86_64-linux-gnu-thread-multi/Demeter/UI/Athena.pm
line 857
Demeter::UI::Athena::OnMenuClick('Wx::Frame=HASH(0x1c77980)',
'Wx::CommandEvent=SCALAR(0xd200dd0)',
'Demeter::UI::Athena=HASH(0x1d0d640)') called at
/home/stevan/perl5/lib/perl5/x86_64-linux-gnu-thread-multi/Demeter/UI/Athena.pm
line 780
Demeter::UI::Athena::__ANON__('Wx::Frame=HASH(0x1c77980)',
'Wx::CommandEvent=SCALAR(0xd200dd0)') called at
/home/stevan/perl5/bin/dathena line 39
eval {...} at /home/stevan/perl5/bin/dathena line 39
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Doing ./Build touch_wrapper does not change anything - all tests pass,
demeter installs, but athena crashes again...
Looking forward to your reply and suggestions on how to solve this problem.
Kind regards,
Stevan
--
Stevan Ognjanovic, Dipl.-Ing.
Nanoparticle Process Technology
Department of Engineering Sciences
University Duisburg-Essen
Lotharstraße 1, MA 349
D-47057 Duisburg
Phone: +49 (0)203 379 1783
Mobile phone: +49 (0)157 3820 6890
Fax: +49 (0)203 379 4453
web: www.nppt.de
e-mail: stevan.ognjanovic at uni-due.de
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