[Ifeffit] MacPorts now contains Demeter 0.9.22 (and requires Perl 5.22)

Fri Aug 14 12:07:16 CDT 2015

Hi Joe,

I am now able to update without errors.

Thanks,
George

On Wed, Aug 12, 2015 at 9:22 AM, Fowler, Joseph W. <joe.fowler at nist.gov>
wrote:

> Dear George,
>
>
> I'm afraid that you've uncovered a silly and known problem. (See
> https://trac.macports.org/ticket/48517 )
>
>
> This bug is fixed in principle but not committed to the MacPorts
> repository. Last week there was some activity on this. Unfortunately, we'll
> need a MacPorts person with the right privileges to commit this change. I
> don't know how to push this forward.
>
>
> If you are a MacPorts expert, then you can certainly grab the patch found
> at that ticket and apply it.  I'm afraid that's something that I don't know
> how to do without an hour of research, though.
>
>
> I'm sorry about that, but we might have to be patient. I will investigate
> how one pushes the MacPorts committer group to commit their changes. Or, I
> mean, other people's changes.
>
>
> Joe
>
>
> ------------------------------
> *From:* George Sterbinsky <GeorgeSterbinsky at u.northwestern.edu>
> *Sent:* Tuesday, August 11, 2015 8:27 PM
> *To:* XAFS Analysis using Ifeffit
> *Subject:* Re: [Ifeffit] MacPorts now contains Demeter 0.9.22 (and
> requires Perl 5.22)
>
> Hi Joe,
>
> Thanks for updating the package! I tried updating, first running "sudo
> port selfupdate" and then "sudo port update demeter-devel". I get the
> following error when I try the latter command:
>
> bash-3.2$ sudo port upgrade demeter-devel
> Password:
> --->  Computing dependencies for ifeffit
> --->  Verifying checksums for ifeffit
> Error: Checksum (rmd160) mismatch for 1.2.final.tar.gz
> Error: Checksum (sha256) mismatch for 1.2.final.tar.gz
> Error: org.macports.checksum for port ifeffit returned: Unable to verify
> file checksums
> Please see the log file for port ifeffit for details:
>
> /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_ifeffit/ifeffit/main.log
> Error: Unable to upgrade port: 1
> To report a bug, follow the instructions in the guide:
>     http://guide.macports.org/#project.tickets
> bash-3.2$
>
> I've attached the log file as well. Any suggestions as to what else I
> might try?
>
> Thank you,
> George
>
>
>
> On Tue, Aug 11, 2015 at 3:49 PM, Fowler, Joseph W. <joe.fowler at nist.gov>
> wrote:
>
>> Dear Bruce:
>>
>>
>> Wait a minute! In fact, I updated the Mac Ports package *demeter* within
>> the last two weeks to use Demeter version 0.9.22. Mac users might want to
>> use the latest version and should consider doing a "port self update &&
>> port upgrade demeter".
>>
>> Users who installed the development version port called *demeter-devel* will
>> also land on 0.9.22 if they upgrade to the latest.
>>
>> Note that the latest Mac Ports version is known as 0.9.22_1, where the
>> revision number _1 corresponds to the upgrade from Perl 5.16 to 5.22 (which
>> the MacPorts team is pushing on). For many users, there will be numerous
>> dependency upgrades when you upgrade to 0.9.22_1, but I found they took
>> only a few minutes in my particular case. This change in Perl versions
>> could conceivably cause problems, but I haven't heard of any.
>>
>> Best wishes,
>> Joe Fowler
>> (MacPorts maintainer for demeter)
>>
>> ------------------------------
>> *From:* Bruce Ravel <bravel at bnl.gov>
>> *Sent:* Tuesday, August 11, 2015 6:55 AM
>> *To:* XAFS Analysis using Ifeffit
>> *Subject:* Re: [Ifeffit] Energy shift after deglitch
>>
>>
>> I don't see the behavior you describe when I follow your recipe.
>> Perhaps it got fixed when I fixed this fellow's issue...?
>>
>> http://millenia.cars.aps.anl.gov/pipermail/ifeffit/2015-May/012496.html
>>
>> Of course, the Mac package is a fair bit behind at this point.
>>
>> B
>>
>> On 08/06/2015 06:10 PM, George Sterbinsky wrote:
>> > Hello,
>> >
>> > I am writing to report a bug in Athena running on OSX 10.10.4. Here are
>> > the steps to reproduce the problem. I'm not sure that all steps are
>> > necessary.
>> >
>> > 1. Open Athena and import the attached project, which contains two
>> > groups that are both marked.
>> > 2. Change plot range to plot from -30 to 30 eV.
>> > 3. Select the "deglitch and truncate" window.
>> > 4. Select group "Ref data.merge".
>> > 5. In deglitch many points, set margin to 0.05, Emin to -24, and Emax to
>> > -20.
>> > 6. Click replot margins.
>> > 7. Click remove points.
>> > 8. Click return to main window.
>> > 9. Click the derivative check box to plot marked groups as normalized
>> > derivative.
>> > 10. Click mu(E) button to plot marked groups as derivative of mu(E).
>> >
>> > When the last step is done the groups appear to shift with respect to
>> > each other. One can switch between Normalized and mu(E) and see the
>> > shift come and go.
>> >
>> > Thank you,
>> > George
>> >
>> >
>> >
>> > _______________________________________________
>> > Ifeffit mailing list
>> > Ifeffit at millenia.cars.aps.anl.gov
>> > http://millenia.cars.aps.anl.gov/mailman/listinfo/ifeffit
>> >
>>
>>
>> --
>>   Bruce Ravel  ------------------------------------ bravel at bnl.gov
>>
>>   National Institute of Standards and Technology
>>   Synchrotron Science Group at NSLS-II
>>   Building 535A
>>   Upton NY, 11973
>>
>>   Homepage:    http://bruceravel.github.io/home/
>>   Software:    https://github.com/bruceravel
>>   Demeter:     http://bruceravel.github.io/demeter/
>>
>>
>> _______________________________________________
>> Ifeffit mailing list
>> Ifeffit at millenia.cars.aps.anl.gov
>> http://millenia.cars.aps.anl.gov/mailman/listinfo/ifeffit
>>
>>
>
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