RE : [Ifeffit] Is artemis running on G5 Mac,
Hi all I have tried horae_update... but it doesn't work... in fact, Artemis remains stuck to version 0.7.007, Athena to version 0.8.029 and so on. As if there was no update! I really don't know what I can do to make Artemis and Athena work. If anyone has any idea, one is welcome. David
-----Message d'origine----- De : ifeffit-bounces@millenia.cars.aps.anl.gov [mailto:ifeffit- bounces@millenia.cars.aps.anl.gov] De la part de Matt Newville Envoyé : dimanche 3 octobre 2004 05:22 À : XAFS Analysis using Ifeffit Objet : Re: [Ifeffit] Is artemis running on G5 Mac,
Michel, David,
Have either of you tried upgrading Artemis using horae_update? I don't know that it will help, but it might....
The message Michel sent looks like a Perl error that wouldn't be processor dependent, so I'm not sure what's going on. All I can say is that Artemis works for me on a G4. I'm perfectly willing to believe that my system has something different from or not included in the dmg (I try hard for this to not happen, but realize that 'works for me' is not always sufficient).
Can anyone else using a Mac report on how Artemis works for them? Thanks,
--Matt
_______________________________________________ Ifeffit mailing list Ifeffit@millenia.cars.aps.anl.gov http://millenia.cars.aps.anl.gov/mailman/listinfo/ifeffit
Hello David,
I have tried horae_update... but it doesn't work... in fact, Artemis remains stuck to version 0.7.007, Athena to version 0.8.029 and so on. As if there was no update! I really don't know what I can do to make Artemis and Athena work.
i confirm that the horae_update script (run yesterday on my G4, not G5 - lucky you) yields the same versions of Artemis and Athena that you mention here. Stefano -- ____________________________________________ Stefano Ciurli Professor of Chemistry Department of Agro-Environmental Science and Technology University of Bologna Viale Giuseppe Fanin, 40 I-40127 Bologna Italy Phone: +39-051-209-6204 Fax: +39-051-209-6203 "Fatti non foste a viver come bruti, ma per seguir virtute e canoscenza" Dante Alighieri - Inferno - Canto XXVI "Ihr seid bestimmt, nicht Tieren gleich zu leben, Nein, Tugend zu erringen und Erkenntnis" "Ye were not form'd to live the life of brutes, But virtue to pursue and knowledge high"
On Wednesday 13 October 2004 10:15 am, Stefano Ciurli wrote:
Hello David,
I have tried horae_update... but it doesn't work... in fact, Artemis remains stuck to version 0.7.007, Athena to version 0.8.029 and so on. As if there was no update! I really don't know what I can do to make Artemis and Athena work.
i confirm that the horae_update script (run yesterday on my G4, not G5 - lucky you) yields the same versions of Artemis and Athena that you mention here. Stefano
David, Stefano, What you guys say confuses me. When I run horae_update (not on a Mac, but I don't see why that should make a difference) it downloads horae-045, which contains athena 0.8.033 and artemis 0.7.011. The horae-update script writes a log file which may be useful to me in figuring out why it is behaving differently for you than it does does for me. If it is behaving somehow wrong for you, you could always go to SourceForge, download the package, unpack it, and do the "perl Makefile.PL; make; sudo make install" incantation by hand. (The script just automates those steps, it does not do anything different.) B -- Bruce Ravel ----------------------------------- ravel@phys.washington.edu Code 6134, Building 3, Room 405 Naval Research Laboratory phone: (1) 202 767 2268 Washington DC 20375, USA fax: (1) 202 767 4642 NRL Synchrotron Radiation Consortium (NRL-SRC) Beamlines X11a, X11b, X23b National Synchrotron Light Source Brookhaven National Laboratory, Upton, NY 11973 My homepage: http://feff.phys.washington.edu/~ravel EXAFS software: http://feff.phys.washington.edu/~ravel/software/exafs/
Hi Bruce,
What you guys say confuses me. When I run horae_update (not on a Mac, but I don't see why that should make a difference) it downloads horae-045, which contains athena 0.8.033 and artemis 0.7.011. The horae-update script writes a log file which may be useful to me in figuring out why it is behaving differently for you than it does does for me.
the log file for horae_update is attached, as produced by horae_update
If it is behaving somehow wrong for you, you could always go to SourceForge, download the package, unpack it, and do the "perl Makefile.PL; make; sudo make install" incantation by hand. (The script just automates those steps, it does not do anything different.)
If I do it manually, the correct versions are installed. Stefano -- ____________________________________________ Stefano Ciurli Professor of Chemistry Department of Agro-Environmental Science and Technology University of Bologna Viale Giuseppe Fanin, 40 I-40127 Bologna Italy Phone: +39-051-209-6204 Fax: +39-051-209-6203 "Fatti non foste a viver come bruti, ma per seguir virtute e canoscenza" Dante Alighieri - Inferno - Canto XXVI "Ihr seid bestimmt, nicht Tieren gleich zu leben, Nein, Tugend zu erringen und Erkenntnis" "Ye were not form'd to live the life of brutes, But virtue to pursue and knowledge high"
Hi, OK, I agree that a simple 'horae_update' also did not work to update thes for me. It appears that the new codes are built but not installed. This definitely did work for me: tar xvzf horae-045.tar.gz cd horae-045 perl Makefile.PL make sudo make install I believe that 'sudo horae_update' will also work. --Matt PS: Oddly, without the 'sudo', horae_update did not give a warning about installing as root. I got largely the same log file as Stefano, and also got this on the screen: print() on closed filehandle OUT at /Applications/Ifeffit/bin/horae_update line 263. perhaps this is printed to STDERR not STDOUT?? it's not in horae_update.log. Anyway, this is where the warning about trying to install as someone other than root is. The horae_update could probably use other improvements, as horae_update --force --file=horae-045.tar.gz still attempts to download the tarball, requires it to be named 'horae-045.tar.gz' and then deletes it.
On Wednesday 13 October 2004 12:49 pm, Matt Newville wrote:
Hi,
OK, I agree that a simple 'horae_update' also did not work to update thes for me. It appears that the new codes are built but not installed. This definitely did work for me: tar xvzf horae-045.tar.gz cd horae-045 perl Makefile.PL make sudo make install
I believe that 'sudo horae_update' will also work.
--Matt
PS: Oddly, without the 'sudo', horae_update did not give a warning about installing as root. I got largely the same log file as Stefano, and also got this on the screen:
print() on closed filehandle OUT at /Applications/Ifeffit/bin/horae_update line 263.
perhaps this is printed to STDERR not STDOUT?? it's not in horae_update.log. Anyway, this is where the warning about trying to install as someone other than root is.
The horae_update could probably use other improvements, as horae_update --force --file=horae-045.tar.gz
still attempts to download the tarball, requires it to be named 'horae-045.tar.gz' and then deletes it.
What you said is exactly right. There was a problem that had horae_update complain about a closed file handle and exit just before doing the "make install" step. I think I fixed it and asked Stefano to give it a try. I'll post a fix tomorrow (I hope) and the fix will be included in the next tarball. B -- Bruce Ravel ----------------------------------- ravel@phys.washington.edu Code 6134, Building 3, Room 405 Naval Research Laboratory phone: (1) 202 767 2268 Washington DC 20375, USA fax: (1) 202 767 4642 NRL Synchrotron Radiation Consortium (NRL-SRC) Beamlines X11a, X11b, X23b National Synchrotron Light Source Brookhaven National Laboratory, Upton, NY 11973 My homepage: http://feff.phys.washington.edu/~ravel EXAFS software: http://feff.phys.washington.edu/~ravel/software/exafs/
participants (4)
-
Bruce Ravel -
Matt Newville -
POGER David 202545 -
Stefano Ciurli