Unable to Import Data In Athena
Dear sir, I am new to this mailing list and excuse me if the question had already been asked. I am not able to import data in the Athena software. I tried to import some of the examples data like Fe_lepidocrocite.000 in the Fe standards folder while importing the data I encountered an error (screenshot has been attached along with the log file generated in the terminal). I am using Linux Mint 18.3 Sylvia OS and perl 5, version 22, subversion 1 (v5.22.1). I followed the instruction for installation here " https://bruceravel.github.io/demeter/documents/SinglePage/demeter_nonroot.ht... " I will be thankful if you could suggest something to getting rid of this issue. Thank you Angshuman Gupta PhD scholar IIT Bombay
I do not recognize that error message. I would need to see what is written underneath the details button and/or what is written in green text in the terminal window behind Athena. B On 9/3/20 9:56 AM, Angshuman Gupta wrote:
Dear sir, I am new to this mailing list and excuse me if the question had already been asked. I am not able to import data in the Athena software. I tried to import some of the examples data like Fe_lepidocrocite.000 in the Fe standards folder while importing the data I encountered an error (screenshot has been attached along with the log file generated in the terminal). I am using Linux Mint 18.3 Sylvia OS and perl 5, version 22, subversion 1 (v5.22.1). I followed the instruction for installation here "https://bruceravel.github.io/demeter/documents/SinglePage/demeter_nonroot.ht... https://urldefense.com/v3/__https://bruceravel.github.io/demeter/documents/S..." I will be thankful if you could suggest something to getting rid of this issue. Thank you Angshuman Gupta PhD scholar IIT Bombay
_______________________________________________ Ifeffit mailing list Ifeffit@millenia.cars.aps.anl.gov http://millenia.cars.aps.anl.gov/mailman/listinfo/ifeffit Unsubscribe: http://millenia.cars.aps.anl.gov/mailman/options/ifeffit
-- Bruce Ravel ------------------------------------ bravel@bnl.gov National Institute of Standards and Technology Synchrotron Science Group at NSLS-II Lead Beamline Scientist, 6BM (BMM) Building 743, Room 114 Upton NY, 11973 Homepage: http://bruceravel.github.io/home/ Beamline: https://www.bnl.gov/ps/beamlines/beamline.php?r=6-BM Software: https://github.com/bruceravel Demeter: http://bruceravel.github.io/demeter/
Hi Angshuman:
WIthout seeing the data file, it is hard to say but my guess is that there
is something in the header of the file before the data that athena is not
able to parse and since there is no filter for that specific file, it
complains. Try removing all the header information before the data columns
start and see if that helps. YOu can then start to put back the header
lines one by oneto find the problem. It could be as simple as having had
the user type in something ina comment line that begins with a number.
Carlo
On Thu, Sep 3, 2020 at 8:57 AM Angshuman Gupta
Dear sir, I am new to this mailing list and excuse me if the question had already been asked. I am not able to import data in the Athena software. I tried to import some of the examples data like Fe_lepidocrocite.000 in the Fe standards folder while importing the data I encountered an error (screenshot has been attached along with the log file generated in the terminal). I am using Linux Mint 18.3 Sylvia OS and perl 5, version 22, subversion 1 (v5.22.1). I followed the instruction for installation here " https://bruceravel.github.io/demeter/documents/SinglePage/demeter_nonroot.ht... " I will be thankful if you could suggest something to getting rid of this issue. Thank you Angshuman Gupta PhD scholar IIT Bombay _______________________________________________ Ifeffit mailing list Ifeffit@millenia.cars.aps.anl.gov http://millenia.cars.aps.anl.gov/mailman/listinfo/ifeffit Unsubscribe: http://millenia.cars.aps.anl.gov/mailman/options/ifeffit
-- Carlo U. Segre -- Duchossois Leadership Professor of Physics Director, Center for Synchrotron Radiation Research and Instrumentation Illinois Institute of Technology Voice: 312.567.3498 Fax: 312.567.3494 segre@iit.edu http://phys.iit.edu/~segre segre@debian.org
Hi Angshuman,
The logfile you attached says that Athena is using Larch and that is where
the error is coming from.
A few comments on that:
a) it looks like it is using Python 2.7 which actually has not been
supported for xraylarch for some time now (well over a year)
b) that the `pyfai` module is not installed, which should not be required
but is what is causing the actual error.
Having `pyfai` not installed should not cause an error, but this all
suggests that your xraylarch installation is quite all.
I would suggest reinstalling xraylarch using Python3 and see if that fixes
the problem.
On Thu, Sep 3, 2020 at 8:57 AM Angshuman Gupta
Dear sir, I am new to this mailing list and excuse me if the question had already been asked. I am not able to import data in the Athena software. I tried to import some of the examples data like Fe_lepidocrocite.000 in the Fe standards folder while importing the data I encountered an error (screenshot has been attached along with the log file generated in the terminal). I am using Linux Mint 18.3 Sylvia OS and perl 5, version 22, subversion 1 (v5.22.1). I followed the instruction for installation here " https://bruceravel.github.io/demeter/documents/SinglePage/demeter_nonroot.ht... " I will be thankful if you could suggest something to getting rid of this issue. Thank you Angshuman Gupta PhD scholar IIT Bombay _______________________________________________ Ifeffit mailing list Ifeffit@millenia.cars.aps.anl.gov http://millenia.cars.aps.anl.gov/mailman/listinfo/ifeffit Unsubscribe: http://millenia.cars.aps.anl.gov/mailman/options/ifeffit
--Matt
Aha! Attached log file. Sorry. Didn't notice that on my phone :( I concur with Matt about Larch. And at the risk of irking Matt, you could try forcing the use of Ifeffit. While maybe not the best choice, it would isolate problems with Demeter from problems with Larch and your python installation. B On 9/3/20 11:00 AM, Matt Newville wrote:
Hi Angshuman,
The logfileyou attached says that Athena is using Larch and that is where the error is coming from. A few comments on that: a) it looks like it is using Python 2.7 which actually has not been supported for xraylarch for some time now (well over a year) b) that the `pyfai` module is not installed, which should not be required but is what is causing the actual error.
Having `pyfai` not installed should not cause an error, but this all suggests that your xraylarch installation is quite all. I would suggest reinstalling xraylarch using Python3 and see if that fixes the problem.
On Thu, Sep 3, 2020 at 8:57 AM Angshuman Gupta
mailto:angshumanmet@gmail.com> wrote: Dear sir, I am new to this mailing list and excuse me if the question had already been asked. I am not able to import data in the Athena software. I tried to import some of the examples data like Fe_lepidocrocite.000 in the Fe standards folder while importing the data I encountered an error (screenshot has been attached along with the log file generated in the terminal). I am using Linux Mint 18.3 Sylvia OS and perl 5, version 22, subversion 1 (v5.22.1). I followed the instruction for installation here "https://bruceravel.github.io/demeter/documents/SinglePage/demeter_nonroot.ht... https://urldefense.com/v3/__https://bruceravel.github.io/demeter/documents/S..." I will be thankful if you could suggest something to getting rid of this issue. Thank you Angshuman Gupta PhD scholar IIT Bombay _______________________________________________ Ifeffit mailing list Ifeffit@millenia.cars.aps.anl.gov mailto:Ifeffit@millenia.cars.aps.anl.gov http://millenia.cars.aps.anl.gov/mailman/listinfo/ifeffit Unsubscribe: http://millenia.cars.aps.anl.gov/mailman/options/ifeffit
--Matt
_______________________________________________ Ifeffit mailing list Ifeffit@millenia.cars.aps.anl.gov http://millenia.cars.aps.anl.gov/mailman/listinfo/ifeffit Unsubscribe: http://millenia.cars.aps.anl.gov/mailman/options/ifeffit
-- Bruce Ravel ------------------------------------ bravel@bnl.gov National Institute of Standards and Technology Synchrotron Science Group at NSLS-II Lead Beamline Scientist, 6BM (BMM) Building 743, Room 114 Upton NY, 11973 Homepage: http://bruceravel.github.io/home/ Beamline: https://www.bnl.gov/ps/beamlines/beamline.php?r=6-BM Software: https://github.com/bruceravel Demeter: http://bruceravel.github.io/demeter/
On Thu, Sep 3, 2020 at 10:11 AM Ravel, Bruce
Aha! Attached log file. Sorry. Didn't notice that on my phone :(
I concur with Matt about Larch.
And at the risk of irking Matt, you could try forcing the use of Ifeffit. While maybe not the best choice, it would isolate problems with Demeter from problems with Larch and your python installation.
You can use ifeffit. It is just not supported and has known limitations and problems that will not ever be fixed.
Dear Sir,
Thank you very much for your quick suggestions and for identifying the
problem that it will not ever be fixed, I have installed the Athena
software in Windows 7 in Virtualbox and all the files are opening smoothly
without any issue. I have attached a screenshot of that.
Thank you
Angshuman Gupta
Ph.D. scholar
IIT Bombay, India
On Thu, Sep 3, 2020 at 8:50 PM Matt Newville
On Thu, Sep 3, 2020 at 10:11 AM Ravel, Bruce
wrote: Aha! Attached log file. Sorry. Didn't notice that on my phone :(
I concur with Matt about Larch.
And at the risk of irking Matt, you could try forcing the use of Ifeffit. While maybe not the best choice, it would isolate problems with Demeter from problems with Larch and your python installation.
You can use ifeffit. It is just not supported and has known limitations and problems that will not ever be fixed.
_______________________________________________ Ifeffit mailing list Ifeffit@millenia.cars.aps.anl.gov http://millenia.cars.aps.anl.gov/mailman/listinfo/ifeffit Unsubscribe: http://millenia.cars.aps.anl.gov/mailman/options/ifeffit
participants (4)
-
Angshuman Gupta
-
Carlo Segre
-
Matt Newville
-
Ravel, Bruce