Hello Bruce, thank you for your constant efforts on improving this great analysis software. I just want to report a few observations on the new versions of Athena and Artemis. I use Windows 2000, Ifeffit + Update 014. - The file http://cars9.uchicago.edu/ifeffit/updates/update.dat still indicates an update level of 012. As discussed before it is easy to update the windows version by downloading the updater zip-files and extract them to the program folder. - The csv-file exported from Athena as two extra commas in the title lines so that title and data is misaligned. - When exporting data from Artemis choosing "Save selected group as" the x-value column is only exported if the original dataset is also selected. - I was often not able to export data via File | Save Data/Fit/Residual As | chi(k) (Artemis message below). I figured out, that it works when the group of the original chi-data is selected in the Data & Paths-window, but not when Fit or Residual is chosen. Another bug: if one of the FEFF-paths is selected while exporting via "Save data as" then the values of the original chi-data will be exported, but the filename and header will reflect the chosen path. I was initially trying to export some FEFF-paths using this method and was quite confused that they all look the same :). A tip that I can give to other users: it something seems to be wrong with the exported data, it is always possible to extract the correct data by saving the project to disc and opening it with an unzip program. Cheers, Gerrit Artemis message: Ifeffit checked for updates recently. Tk::Error: Can't call method "param_summary" on unblessed reference at script/ar temis line 7878. [\&main::save_data,fit,k] (menu invoke) main::__ANON__('Tk::Error: Can\'t call method "param_summary" on unbless ed refer...') called at blib\lib\Tk.pm (autosplit into blib\lib\auto\Tk\Error.al ) line 402 Tk::Error('MainWindow=HASH(0x219c69fc)', 'Can\'t call method "param_summ ary" on unblessed reference at scr...', '[\&main::save_data,fit,k]', '(menu invo ke)') called at Tk.pm line 340 eval {...} called at Tk.pm line 340 Tk::MainLoop() called at script/artemis line 1798 require main called at ../blib/lib/PAR.pm line 260 PAR::_run_member('Archive::Zip::ZipFileMember=HASH(0x11c0104)', 1) calle d at script/main.pl line 4 require main called at ../blib/lib/PAR.pm line 260 PAR::_run_member('Archive::Zip::ZipFileMember=HASH(0x11c0254)') called a t ../blib/lib/PAR.pm line 226 PAR::import('PAR') called at -e line 824 __par_pl::BEGIN() called at script/artemis line 0 eval {...} called at script/artemis line 0
Hi Gerrit, Everyone, Update 014 is just about ready to be 'released'. That is, Bruce and I put together a new updater (as you noticed -- but it's subject to change!!) with new versions of hephaestus, athena, artemis, and diana, and the Ifeffit library, but I've tested the whole thing on only one machine. Barring unforeseen disasters, I'm expecting to release this update later today. --Matt On Thu, 5 May 2005, Gerrit Schmithals wrote:
Hello Bruce,
thank you for your constant efforts on improving this great analysis software. I just want to report a few observations on the new versions of Athena and Artemis. I use Windows 2000, Ifeffit + Update 014.
- The file http://cars9.uchicago.edu/ifeffit/updates/update.dat still indicates an update level of 012. As discussed before it is easy to update the windows version by downloading the updater zip-files and extract them to the program folder.
- The csv-file exported from Athena as two extra commas in the title lines so that title and data is misaligned.
- When exporting data from Artemis choosing "Save selected group as" the x-value column is only exported if the original dataset is also selected.
- I was often not able to export data via File | Save Data/Fit/Residual As | chi(k) (Artemis message below). I figured out, that it works when the group of the original chi-data is selected in the Data & Paths-window, but not when Fit or Residual is chosen. Another bug: if one of the FEFF-paths is selected while exporting via "Save data as" then the values of the original chi-data will be exported, but the filename and header will reflect the chosen path. I was initially trying to export some FEFF-paths using this method and was quite confused that they all look the same :). A tip that I can give to other users: it something seems to be wrong with the exported data, it is always possible to extract the correct data by saving the project to disc and opening it with an unzip program.
Cheers, Gerrit
Artemis message: Ifeffit checked for updates recently. Tk::Error: Can't call method "param_summary" on unblessed reference at script/ar temis line 7878. [\&main::save_data,fit,k] (menu invoke) main::__ANON__('Tk::Error: Can\'t call method "param_summary" on unbless ed refer...') called at blib\lib\Tk.pm (autosplit into blib\lib\auto\Tk\Error.al ) line 402 Tk::Error('MainWindow=HASH(0x219c69fc)', 'Can\'t call method "param_summ ary" on unblessed reference at scr...', '[\&main::save_data,fit,k]', '(menu invo ke)') called at Tk.pm line 340 eval {...} called at Tk.pm line 340 Tk::MainLoop() called at script/artemis line 1798 require main called at ../blib/lib/PAR.pm line 260 PAR::_run_member('Archive::Zip::ZipFileMember=HASH(0x11c0104)', 1) calle d at script/main.pl line 4 require main called at ../blib/lib/PAR.pm line 260 PAR::_run_member('Archive::Zip::ZipFileMember=HASH(0x11c0254)') called a t ../blib/lib/PAR.pm line 226 PAR::import('PAR') called at -e line 824 __par_pl::BEGIN() called at script/artemis line 0 eval {...} called at script/artemis line 0
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On Thursday 05 May 2005 08:45, Gerrit Schmithals wrote:
- The csv-file exported from Athena as two extra commas in the title lines so that title and data is misaligned.
OK, I'll look into it.
- When exporting data from Artemis choosing "Save selected group as" the x-value column is only exported if the original dataset is also selected.
You're right. That's broken. Interestingly, it seems to be differently broken in the development version. Swell. ;-( I'll put it on the list of things to fix.
A tip that I can give to other users: it something seems to be wrong with the exported data, it is always possible to extract the correct data by saving the project to disc and opening it with an unzip program.
That's a good point. The .apj files are just normal .zip files with a different extension. That was chosen specifically so that normal zip tools could be used to examine the data. My one caveat is that you should be careful not to change anything in the zip file -- Artemis is not guaranteed to be robust in that situation. B -- Bruce Ravel ----------------------------------- bravel@anl.gov -or- ravel@phys.washington.edu Environmental Research Division, Building 203, Room E-165 Argonne National Laboratory phone: (1) 630 252 5033 Argonne IL 60439, USA fax: (1) 630 252 9793 My homepage: http://feff.phys.washington.edu/~ravel EXAFS software: http://feff.phys.washington.edu/~ravel/software/exafs/
On Thursday 05 May 2005 08:45, Gerrit Schmithals wrote:
- The csv-file exported from Athena as two extra commas in the title lines so that title and data is misaligned.
Gerrit, I think I fixed the alignment problem in the csv reports. Attched is a CVS file that is, I think, correct. Could you take a look and tell me if you agree? If not, can you point out where exactly I need to put or remove commas? I should mention that I think it is correct because it looks like everything is lined up properly using three different spreadsheets. Thanks, B -- Bruce Ravel ----------------------------------- bravel@anl.gov -or- ravel@phys.washington.edu Environmental Research Division, Building 203, Room E-165 Argonne National Laboratory phone: (1) 630 252 5033 Argonne IL 60439, USA fax: (1) 630 252 9793 My homepage: http://feff.phys.washington.edu/~ravel EXAFS software: http://feff.phys.washington.edu/~ravel/software/exafs/
Drat! I intended that last one to go only to Gerrit. Of course, anoyone else who would like to weigh in on the arcana of Athena's CSV reports is welcome to do so ;-) B -- Bruce Ravel ----------------------------------- bravel@anl.gov -or- ravel@phys.washington.edu Environmental Research Division, Building 203, Room E-165 Argonne National Laboratory phone: (1) 630 252 5033 Argonne IL 60439, USA fax: (1) 630 252 9793 My homepage: http://feff.phys.washington.edu/~ravel EXAFS software: http://feff.phys.washington.edu/~ravel/software/exafs/
participants (3)
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Bruce Ravel -
Gerrit Schmithals -
Matt Newville