Re: [Ifeffit] inquire for the EXAFS of the mixture of species
Hi Here an another routine for itfa (PCA_GUI executable). http://code.google.com/p/prestopronto/ You can use athena to create the input file (a file with one energy column and the rest of column are spectra). All the best Carmelo
Message: 1 Date: Thu, 08 Mar 2012 17:00:15 +0900 From: Takahide Yamaguchi <11nm023s@mcs.ibaraki.ac.jp> To: ifeffit@millenia.cars.aps.anl.gov Subject: [Ifeffit] what is the reasonable arc-tan for edge jump Message-ID: <4F58670F.5020600@mcs.ibaraki.ac.jp> Content-Type: text/plain; charset="iso-2022-jp"
Message: 2 Date: Thu, 8 Mar 2012 08:13:08 +0000 From:
To: Subject: Re: [Ifeffit] inquire for the EXAFS of the mixture of species Message-ID: Content-Type: text/plain; charset="us-ascii" Hi Winejia,
I think your problem may well be harder than an LC approach as suggest by Darius will solve, as it is possible (probable) that the reaction intermediates are not known structurally so you don't have model spectrum of them. Complex solution equilibrium mixtures are about as tough as it gets for soluble EXAFS problems. The methods that tend to work are Principal component analysis (which is available in sixpack and Athena) This will probably tell you how many species you have in your reactant spectra, and will also tell you by target transformation if a spectrum of a model you have is one of those species. However to identify the unknowns you may need to use a more advanced approach like iterative transformation factor analysis (ITFA) . there is an itfa package available from the RoBL esrf beamline http://www.esrf.eu/UsersAndScience/Experiments/CRG/BM20/Software/ This should be able to give you the spectra of the separate solution spectra which then you can analyse with Artemis.
The key things you need to have is more spectra representing in different ratios of the solution species than the total no of solution species, otherwise your problem is underdetermined, preferably quite a lot more.
Regards Fred
Prof. J F W Mosselmans Principal Beamline Scientist I18 Diamond Light Source Diamond House Harwell Campus Didcot Oxon OX11 ODE UK
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Carmelo Prestipino