Problem with Demeter 0.9.18 pluck tool
Dear members of the list, I finally got the opportunity to start using Dathena. I don't know if I've found a bug or if I'm doing something stupid (chances are not too low, actually...). - I am using Ubuntu 13.04 - Demeter 0.9.18 (I did the upgrade to 0.9.18 but ran into some error messages as reported on September 10th on this list, could they be related to the behaviour I am reporting here?). - I cannot say if it worked before the upgrade to 0.9.18 since I never took the time to use Demeter properly until now. I'm trying to pick/pluck a value from the graph. - When I first launch Dathena, and I press a pluck button for the first time I can see the expected message at the bottom of the GUI ("Double click on a point to pluck its value ..."): as hard as I tried (I tried many different combinations) I could never get the thing to work (parameter value in the 'box' never records the value where I double click). After 10s I see the 'Pluck timed out' message. - Then, when I click again on the pluck button, a value is recorded instantly in the 'box' without any double-clicking from me, and this value is crazy. An example: for a low k parameter of the FT I get -100000. The example in the attached screenshot shows a value for the normalization range low limit at -107112.52eV (note that the E0 value is 'integrated' in this number: the iron edge at 7112.52, see screenshot. I tried another set of data, silver K edge and the same thing occured: a weird number, with the E0 value inside, got recorded in the 'box). - Same problem with Dartemis. Tell me what I can do to help... or what I'm doing stupid. Thanks. denis
Denis, I have 13.04 on several of my machines at work and at home. I do not see the behavior you are describing. Let me try installing 13.04 fresh on one of my computers and see if the same thing happens. If not, I'll figure out how to troubleshoot. B On 09/27/2013 08:24 AM, Denis Testemale wrote:
Dear members of the list, I finally got the opportunity to start using Dathena. I don't know if I've found a bug or if I'm doing something stupid (chances are not too low, actually...).
- I am using Ubuntu 13.04 - Demeter 0.9.18 (I did the upgrade to 0.9.18 but ran into some error messages as reported on September 10th on this list, could they be related to the behaviour I am reporting here?). - I cannot say if it worked before the upgrade to 0.9.18 since I never took the time to use Demeter properly until now.
I'm trying to pick/pluck a value from the graph. - When I first launch Dathena, and I press a pluck button for the first time I can see the expected message at the bottom of the GUI ("Double click on a point to pluck its value ..."): as hard as I tried (I tried many different combinations) I could never get the thing to work (parameter value in the 'box' never records the value where I double click). After 10s I see the 'Pluck timed out' message. - Then, when I click again on the pluck button, a value is recorded instantly in the 'box' without any double-clicking from me, and this value is crazy. An example: for a low k parameter of the FT I get -100000. The example in the attached screenshot shows a value for the normalization range low limit at -107112.52eV (note that the E0 value is 'integrated' in this number: the iron edge at 7112.52, see screenshot. I tried another set of data, silver K edge and the same thing occured: a weird number, with the E0 value inside, got recorded in the 'box). - Same problem with Dartemis.
Tell me what I can do to help... or what I'm doing stupid. Thanks. denis
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-- Bruce Ravel ------------------------------------ bravel@bnl.gov National Institute of Standards and Technology Synchrotron Science Group at NSLS --- Beamlines U7A, X24A, X23A2 Building 535A Upton NY, 11973 Homepage: http://xafs.org/BruceRavel Software: https://github.com/bruceravel
Denis, I have a question. What gnuplot terminal do you use? That is, what's the value of the gnuplot->terminal configuration parameter? It seems that the way I do the pluck buttons does not work with the X11 terminal, but it should work with the wxt terminal. So if that parameter is set to "X11", change it to "wxt", then try plucking again. B Bruce Ravel ------------------------------------ bravel@bnl.gov National Institute of Standards and Technology Synchrotron Methods Group at NSLS --- Beamlines U7A, X24A, X23A2 Building 535A Upton NY, 11973 Homepage: http://xafs.org/BruceRavel Software: https://github.com/bruceravel ________________________________________ From: ifeffit-bounces@millenia.cars.aps.anl.gov [ifeffit-bounces@millenia.cars.aps.anl.gov] on behalf of Denis Testemale [denis.testemale@grenoble.cnrs.fr] Sent: Friday, September 27, 2013 8:24 AM To: ifeffit mailing list Subject: [Ifeffit] Problem with Demeter 0.9.18 pluck tool Dear members of the list, I finally got the opportunity to start using Dathena. I don't know if I've found a bug or if I'm doing something stupid (chances are not too low, actually...). - I am using Ubuntu 13.04 - Demeter 0.9.18 (I did the upgrade to 0.9.18 but ran into some error messages as reported on September 10th on this list, could they be related to the behaviour I am reporting here?). - I cannot say if it worked before the upgrade to 0.9.18 since I never took the time to use Demeter properly until now. I'm trying to pick/pluck a value from the graph. - When I first launch Dathena, and I press a pluck button for the first time I can see the expected message at the bottom of the GUI ("Double click on a point to pluck its value ..."): as hard as I tried (I tried many different combinations) I could never get the thing to work (parameter value in the 'box' never records the value where I double click). After 10s I see the 'Pluck timed out' message. - Then, when I click again on the pluck button, a value is recorded instantly in the 'box' without any double-clicking from me, and this value is crazy. An example: for a low k parameter of the FT I get -100000. The example in the attached screenshot shows a value for the normalization range low limit at -107112.52eV (note that the E0 value is 'integrated' in this number: the iron edge at 7112.52, see screenshot. I tried another set of data, silver K edge and the same thing occured: a weird number, with the E0 value inside, got recorded in the 'box). - Same problem with Dartemis. Tell me what I can do to help... or what I'm doing stupid. Thanks. denis
Hi Denis, The plucking thing is odd. Both the X11 and wxt terminals seem to interact with the clipboard in the same way, but my code only successfully retrieves the point from the clipboard when I use the wxt terminal. B Bruce Ravel ------------------------------------ bravel@bnl.gov National Institute of Standards and Technology Synchrotron Methods Group at NSLS --- Beamlines U7A, X24A, X23A2 Building 535A Upton NY, 11973 Homepage: http://xafs.org/BruceRavel Software: https://github.com/bruceravel _______________________________________________ Ifeffit mailing list Ifeffit@millenia.cars.aps.anl.gov http://millenia.cars.aps.anl.gov/mailman/listinfo/ifeffit
Recently, I download Demeter and began playing with (D)Athena. I am having similar problems to those encountered by Denis. It may be that all I need is to fix the terminal parameter. Would you please tell me how to check the value of the terminal? Best, Azzam -----Original Message----- From: ifeffit-bounces@millenia.cars.aps.anl.gov [mailto:ifeffit-bounces@millenia.cars.aps.anl.gov] On Behalf Of Ravel, Bruce Sent: Friday, September 27, 2013 3:51 PM To: XAFS Analysis using Ifeffit Subject: Re: [Ifeffit] Problem with Demeter 0.9.18 pluck tool Hi Denis, The plucking thing is odd. Both the X11 and wxt terminals seem to interact with the clipboard in the same way, but my code only successfully retrieves the point from the clipboard when I use the wxt terminal. B Bruce Ravel ------------------------------------ bravel@bnl.gov National Institute of Standards and Technology Synchrotron Methods Group at NSLS --- Beamlines U7A, X24A, X23A2 Building 535A Upton NY, 11973 Homepage: http://xafs.org/BruceRavel Software: https://github.com/bruceravel _______________________________________________ Ifeffit mailing list Ifeffit@millenia.cars.aps.anl.gov http://millenia.cars.aps.anl.gov/mailman/listinfo/ifeffit _______________________________________________ Ifeffit mailing list Ifeffit@millenia.cars.aps.anl.gov http://millenia.cars.aps.anl.gov/mailman/listinfo/ifeffit
Reading the manual is often a good start. http://bruceravel.github.io/demeter/aug/other/prefs.html B Bruce Ravel ------------------------------------ bravel@bnl.gov National Institute of Standards and Technology Synchrotron Methods Group at NSLS --- Beamlines U7A, X24A, X23A2 Building 535A Upton NY, 11973 Homepage: http://xafs.org/BruceRavel Software: https://github.com/bruceravel ________________________________________ From: ifeffit-bounces@millenia.cars.aps.anl.gov [ifeffit-bounces@millenia.cars.aps.anl.gov] on behalf of Mansour, Azzam N CIV NSWCCD W. Bethesda, 6160 [azzam.mansour@navy.mil] Sent: Monday, September 30, 2013 4:29 PM To: XAFS Analysis using Ifeffit Subject: Re: [Ifeffit] Problem with Demeter 0.9.18 pluck tool Recently, I download Demeter and began playing with (D)Athena. I am having similar problems to those encountered by Denis. It may be that all I need is to fix the terminal parameter. Would you please tell me how to check the value of the terminal? Best, Azzam -----Original Message----- From: ifeffit-bounces@millenia.cars.aps.anl.gov [mailto:ifeffit-bounces@millenia.cars.aps.anl.gov] On Behalf Of Ravel, Bruce Sent: Friday, September 27, 2013 3:51 PM To: XAFS Analysis using Ifeffit Subject: Re: [Ifeffit] Problem with Demeter 0.9.18 pluck tool Hi Denis, The plucking thing is odd. Both the X11 and wxt terminals seem to interact with the clipboard in the same way, but my code only successfully retrieves the point from the clipboard when I use the wxt terminal. B Bruce Ravel ------------------------------------ bravel@bnl.gov National Institute of Standards and Technology Synchrotron Methods Group at NSLS --- Beamlines U7A, X24A, X23A2 Building 535A Upton NY, 11973 Homepage: http://xafs.org/BruceRavel Software: https://github.com/bruceravel _______________________________________________ Ifeffit mailing list Ifeffit@millenia.cars.aps.anl.gov http://millenia.cars.aps.anl.gov/mailman/listinfo/ifeffit _______________________________________________ Ifeffit mailing list Ifeffit@millenia.cars.aps.anl.gov http://millenia.cars.aps.anl.gov/mailman/listinfo/ifeffit
I agree Bruce. Thanks. Azzam -----Original Message----- From: ifeffit-bounces@millenia.cars.aps.anl.gov [mailto:ifeffit-bounces@millenia.cars.aps.anl.gov] On Behalf Of Ravel, Bruce Sent: Monday, September 30, 2013 5:04 PM To: XAFS Analysis using Ifeffit Subject: Re: [Ifeffit] Problem with Demeter 0.9.18 pluck tool Reading the manual is often a good start. http://bruceravel.github.io/demeter/aug/other/prefs.html B Bruce Ravel ------------------------------------ bravel@bnl.gov National Institute of Standards and Technology Synchrotron Methods Group at NSLS --- Beamlines U7A, X24A, X23A2 Building 535A Upton NY, 11973 Homepage: http://xafs.org/BruceRavel Software: https://github.com/bruceravel ________________________________________ From: ifeffit-bounces@millenia.cars.aps.anl.gov [ifeffit-bounces@millenia.cars.aps.anl.gov] on behalf of Mansour, Azzam N CIV NSWCCD W. Bethesda, 6160 [azzam.mansour@navy.mil] Sent: Monday, September 30, 2013 4:29 PM To: XAFS Analysis using Ifeffit Subject: Re: [Ifeffit] Problem with Demeter 0.9.18 pluck tool Recently, I download Demeter and began playing with (D)Athena. I am having similar problems to those encountered by Denis. It may be that all I need is to fix the terminal parameter. Would you please tell me how to check the value of the terminal? Best, Azzam -----Original Message----- From: ifeffit-bounces@millenia.cars.aps.anl.gov [mailto:ifeffit-bounces@millenia.cars.aps.anl.gov] On Behalf Of Ravel, Bruce Sent: Friday, September 27, 2013 3:51 PM To: XAFS Analysis using Ifeffit Subject: Re: [Ifeffit] Problem with Demeter 0.9.18 pluck tool Hi Denis, The plucking thing is odd. Both the X11 and wxt terminals seem to interact with the clipboard in the same way, but my code only successfully retrieves the point from the clipboard when I use the wxt terminal. B Bruce Ravel ------------------------------------ bravel@bnl.gov National Institute of Standards and Technology Synchrotron Methods Group at NSLS --- Beamlines U7A, X24A, X23A2 Building 535A Upton NY, 11973 Homepage: http://xafs.org/BruceRavel Software: https://github.com/bruceravel _______________________________________________ Ifeffit mailing list Ifeffit@millenia.cars.aps.anl.gov http://millenia.cars.aps.anl.gov/mailman/listinfo/ifeffit _______________________________________________ Ifeffit mailing list Ifeffit@millenia.cars.aps.anl.gov http://millenia.cars.aps.anl.gov/mailman/listinfo/ifeffit _______________________________________________ Ifeffit mailing list Ifeffit@millenia.cars.aps.anl.gov http://millenia.cars.aps.anl.gov/mailman/listinfo/ifeffit
participants (4)
-
Bruce Ravel -
Denis Testemale -
Mansour, Azzam N CIV NSWCCD W. Bethesda, 6160 -
Ravel, Bruce