Re: [Ifeffit] Problem with importing projects from ATHENA into ARTEMIS
Hi Alexander,
I think you may not alone in having this issue. You should be using
normalized chi(k) in Artemis, but I don't think Artemis would be
reading chi(k) from the project file incorrectly.... Perhaps there is
something strange about how you're doing the normalization? Or
perhaps it is just a question of what k-weighting is being used for
the plot. Unfortunately, the PNGs I see have been cropped and don't
show the labels of the axes.
I'm sending this to the Ifeffit mailing list, where you'll probably
get a more complete answer.
On Mon, Apr 7, 2014 at 9:57 AM, Britz, Alexander
Dear Mr. Newville,
I came across a problem when I import an ATHENA project after normalization into ARTEMIS. Maybe you could tell me who to contact about this problem. Let me try to explain it in few words:
I normalize my EXAFS data in ATHENA and safe it a s a .prj file. When I open the .prj file in ARTEMIS I noticed, that the amplitude of some oscillations have changed. When I save the chi(k) as .txt, this problem does not occur. When I open the chi(k) text file in ARTEMIS, the normalization and the amplitude of the oscillations are exactly the same as in ATHEN.
I have attached a .png file for the EXAFS in k-space. It is the same .prj file, one time opened in ARTEMIS, one time in ATHENA. To be more specific, the amplitude of the oscillation at k=3 is -1.4 and -1.6, respectively.
Thank you very much for your help in advance!
Best regards from Hamburg, Alexander
________________________________________ Alexander Britz European XFEL GmbH alexander.britz@xfel.eu Tel. +49 (0)40 8998-6986 Fax +49 (0)40 8998-1905 www.xfel.eu/de
Postadresse: Notkestraße 85, 22607 Hamburg Sitz: Albert-Einstein-Ring 19, 22761 Hamburg
Geschäftsführer: Prof. Dr. Massimo Altarelli, Dr. Claudia Burger Registriert als European X-Ray Free-Electron Laser Facility GmbH beim Amtsgericht Hamburg, HRB 111165
-- --Matt Newville <newville at cars.uchicago.edu> 630-252-0431
There are a number of known problems with the current version of Artemis. It's pretty much impossible for me to troubleshoot without examples being posted to the mailing list. B On 04/07/2014 11:17 AM, Matt Newville wrote:
Hi Alexander,
I think you may not alone in having this issue. You should be using normalized chi(k) in Artemis, but I don't think Artemis would be reading chi(k) from the project file incorrectly.... Perhaps there is something strange about how you're doing the normalization? Or perhaps it is just a question of what k-weighting is being used for the plot. Unfortunately, the PNGs I see have been cropped and don't show the labels of the axes.
I'm sending this to the Ifeffit mailing list, where you'll probably get a more complete answer.
On Mon, Apr 7, 2014 at 9:57 AM, Britz, Alexander
wrote: Dear Mr. Newville,
I came across a problem when I import an ATHENA project after normalization into ARTEMIS. Maybe you could tell me who to contact about this problem. Let me try to explain it in few words:
I normalize my EXAFS data in ATHENA and safe it a s a .prj file. When I open the .prj file in ARTEMIS I noticed, that the amplitude of some oscillations have changed. When I save the chi(k) as .txt, this problem does not occur. When I open the chi(k) text file in ARTEMIS, the normalization and the amplitude of the oscillations are exactly the same as in ATHEN.
I have attached a .png file for the EXAFS in k-space. It is the same .prj file, one time opened in ARTEMIS, one time in ATHENA. To be more specific, the amplitude of the oscillation at k=3 is -1.4 and -1.6, respectively.
Thank you very much for your help in advance!
Best regards from Hamburg, Alexander
________________________________________ Alexander Britz European XFEL GmbH alexander.britz@xfel.eu Tel. +49 (0)40 8998-6986 Fax +49 (0)40 8998-1905 www.xfel.eu/de
Postadresse: Notkestraße 85, 22607 Hamburg Sitz: Albert-Einstein-Ring 19, 22761 Hamburg
Geschäftsführer: Prof. Dr. Massimo Altarelli, Dr. Claudia Burger Registriert als European X-Ray Free-Electron Laser Facility GmbH beim Amtsgericht Hamburg, HRB 111165
-- Bruce Ravel ------------------------------------ bravel@bnl.gov National Institute of Standards and Technology Synchrotron Science Group at NSLS --- Beamlines U7A, X24A, X23A2 Building 535A Upton NY, 11973 Homepage: http://xafs.org/BruceRavel Software: https://github.com/bruceravel
participants (2)
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Bruce Ravel
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Matt Newville