Athena with IOS "El Capitan"
Hello, I am having some issues with the Athena software. After upgrading the OS of the macbook pro to "El Capitan" Version 10.11.3, Athena stopped working properly. Once the iXAFS icon was clicked nothing happened. I decided to do a bit of research and installed the latest verion of XQuartz version 2.7.8. I was able to launch athena by executting "athena" from the terminal. Up to that point, I figured that everything was running smoothly until I realized that I could prompt any plots. Something in the software or operating system was not allowing Athena to display plots. I would be really grateful if you could provide me with a solution to this problem (if there is any) or any advice that would allow me to process XAS data again. Thank you Regards, Manuel Cossio
Hi Manuel,
On Mon, Feb 1, 2016 at 4:16 PM, Manuel Cossio Kohler
Hello,
I am having some issues with the Athena software. After upgrading the OS of the macbook pro to "El Capitan" Version 10.11.3, Athena stopped working properly. Once the iXAFS icon was clicked nothing happened. I decided to do a bit of research and installed the latest verion of XQuartz version 2.7.8. I was able to launch athena by executting "athena" from the terminal. Up to that point, I figured that everything was running smoothly until I realized that I could prompt any plots. Something in the software or operating system was not allowing Athena to display plots. I would be really grateful if you could provide me with a solution to this problem (if there is any) or any advice that would allow me to process XAS data again. Thank you
Regards,
Manuel Cossio
The iXAFS code is very old and does not provide the latest, supported version of Athena (et al). I'm not surprised that plotting doesn't work, as this relied on other old libraries/applications that may not be well supported on 10.11. The installation instructions at http://bruceravel.github.io/demeter/#mac should work, especially if you've already installed XQuartz. The installation with MacPorts isn't quite as fast as with a disk image, but it is straightforward, and does give the latest versions too. --Matt
Hi Matt,
I followed the instructions. I updated the MacPorts and was able to go
through all the different steps. However, the software still does not
display any plots. I am wondering if there is any sorts of conflicts
between the old and new updates. is there anything else you would recommend
trying? Thanks a lot!
Regards,
Manuel
On Tue, Feb 2, 2016 at 9:46 AM, Matt Newville
Hi Manuel,
On Mon, Feb 1, 2016 at 4:16 PM, Manuel Cossio Kohler
wrote:
Hello,
I am having some issues with the Athena software. After upgrading the OS of the macbook pro to "El Capitan" Version 10.11.3, Athena stopped working properly. Once the iXAFS icon was clicked nothing happened. I decided to do a bit of research and installed the latest verion of XQuartz version 2.7.8. I was able to launch athena by executting "athena" from the terminal. Up to that point, I figured that everything was running smoothly until I realized that I could prompt any plots. Something in the software or operating system was not allowing Athena to display plots. I would be really grateful if you could provide me with a solution to this problem (if there is any) or any advice that would allow me to process XAS data again. Thank you
Regards,
Manuel Cossio
The iXAFS code is very old and does not provide the latest, supported version of Athena (et al). I'm not surprised that plotting doesn't work, as this relied on other old libraries/applications that may not be well supported on 10.11.
The installation instructions at http://bruceravel.github.io/demeter/#mac should work, especially if you've already installed XQuartz. The installation with MacPorts isn't quite as fast as with a disk image, but it is straightforward, and does give the latest versions too.
--Matt
_______________________________________________ Ifeffit mailing list Ifeffit@millenia.cars.aps.anl.gov http://millenia.cars.aps.anl.gov/mailman/listinfo/ifeffit Unsubscribe: http://millenia.cars.aps.anl.gov/mailman/options/ifeffit
On 02/02/2016 04:33 PM, Manuel Cossio Kohler wrote:
I followed the instructions. I updated the MacPorts and was able to go through all the different steps. However, the software still does not display any plots. I am wondering if there is any sorts of conflicts between the old and new updates. is there anything else you would recommend trying? Thanks a lot!
The crash in December of the machine that hosts the mailing list seems to have broken a lot of links to old messages, so it's a bit hard to find things. Drat :( I think this: http://www.mail-archive.com/ifeffit@millenia.cars.aps.anl.gov/msg05228.html is likely the same as your problem. (Try setting it to "aqua".) Here's what I mean by "setting it": http://bruceravel.github.io/demeter/aug/other/prefs.html My standard caveat of not owning a Mac myself applies here, of course. B -- Bruce Ravel ------------------------------------ bravel@bnl.gov National Institute of Standards and Technology Synchrotron Science Group at NSLS-II Building 535A Upton NY, 11973 Homepage: http://bruceravel.github.io/home/ Software: https://github.com/bruceravel Demeter: http://bruceravel.github.io/demeter/
Thanks a lot Bruce. This help me solve the issue. Much appreciated!
Cheers,
Manuel
On Tue, Feb 2, 2016 at 3:09 PM, Bruce Ravel
On 02/02/2016 04:33 PM, Manuel Cossio Kohler wrote:
I followed the instructions. I updated the MacPorts and was able to go through all the different steps. However, the software still does not display any plots. I am wondering if there is any sorts of conflicts between the old and new updates. is there anything else you would recommend trying? Thanks a lot!
The crash in December of the machine that hosts the mailing list seems to have broken a lot of links to old messages, so it's a bit hard to find things. Drat :( I think this:
http://www.mail-archive.com/ifeffit@millenia.cars.aps.anl.gov/msg05228.html
is likely the same as your problem. (Try setting it to "aqua".)
Here's what I mean by "setting it":
http://bruceravel.github.io/demeter/aug/other/prefs.html
My standard caveat of not owning a Mac myself applies here, of course.
B
-- Bruce Ravel ------------------------------------ bravel@bnl.gov
National Institute of Standards and Technology Synchrotron Science Group at NSLS-II Building 535A Upton NY, 11973
Homepage: http://bruceravel.github.io/home/ Software: https://github.com/bruceravel Demeter: http://bruceravel.github.io/demeter/
_______________________________________________ Ifeffit mailing list Ifeffit@millenia.cars.aps.anl.gov http://millenia.cars.aps.anl.gov/mailman/listinfo/ifeffit Unsubscribe: http://millenia.cars.aps.anl.gov/mailman/options/ifeffit
participants (3)
-
Bruce Ravel
-
Manuel Cossio Kohler
-
Matt Newville