Re: [Ifeffit] No plot window in Athena/Demeter on Mac OS X Yosemite
Thank you George! Problem solved! :)
Em 22/09/2015, à(s) 19:13, ifeffit-request@millenia.cars.aps.anl.gov escreveu:
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Today's Topics:
1. Re: No plot window in Athena/Demeter on Mac OS X Yosemite (Raimundo Lora Serrano) 2. Re: No plot window in Athena/Demeter on Mac OS X Yosemite (Bruce Ravel) 3. Re: No plot window in Athena/Demeter on Mac OS X Yosemite (George Sterbinsky)
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Message: 1 Date: Tue, 22 Sep 2015 18:03:14 -0300 From: Raimundo Lora Serrano
To: ifeffit@millenia.cars.aps.anl.gov Subject: Re: [Ifeffit] No plot window in Athena/Demeter on Mac OS X Yosemite Message-ID: Content-Type: text/plain; charset=utf-8 Bruce, I did what you suggested.
* Can you run gnuplot from the command line?
Yes.
* If so, what is the default terminal? To find out, do this at the gnuplot command line: "show terminal?
?aqua? is the default terminal.
* If the default terminal is something other than "X11", "wxt", or "qt", can you reset it? That is done at the gnuplot command line by, for instance, "set terminal wxt?
I reset as suggested. gnuplot is working fine. The plot is generated. Even with ?aqua?, the plot is visualized.
* Can you make a plot? To find out, plot a sine wave at the gnuplot command line with "plot sin(x)?
Yes. I just tested and left the gnuplot window opened and ran ?athena? in another terminal, but there is no communication with gnuplot. Still, no data is plotted.
Em 22/09/2015, ?(s) 16:53, ifeffit-request@millenia.cars.aps.anl.gov escreveu:
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Today's Topics:
1. Re: No plot window in Athena/Demeter on Mac OS X Yosemite (Raimundo Lora Serrano) 2. Re: No plot window in Athena/Demeter on Mac OS X Yosemite (Bruce Ravel)
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Message: 1 Date: Tue, 22 Sep 2015 16:38:40 -0300 From: Raimundo Lora Serrano
To: ifeffit@millenia.cars.aps.anl.gov Subject: Re: [Ifeffit] No plot window in Athena/Demeter on Mac OS X Yosemite Message-ID: <1F27C0D9-A926-490A-A33B-2A46DB8FCEDD@infis.ufu.br> Content-Type: text/plain; charset="utf-8" Hi again, I just reinstalled ?xorg-server demeter?, now I get: /private/tmp/com.apple.launchd.lXiE4HyZ2W/org.macports:0
but there is no plot window. The problem remains.
Em 22/09/2015, ?(s) 14:00, ifeffit-request@millenia.cars.aps.anl.gov escreveu:
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Today's Topics:
1. Re: No plot window in Athena/Demeter on Mac OS X Yosemite (George Sterbinsky)
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Message: 1 Date: Tue, 22 Sep 2015 10:05:29 -0500 From: George Sterbinsky
To: XAFS Analysis using Ifeffit Subject: Re: [Ifeffit] No plot window in Athena/Demeter on Mac OS X Yosemite Message-ID: Content-Type: text/plain; charset="utf-8" Hi All,
The result I get is /private/tmp/com.apple.launchd.a2i2wnuP2l/org.macosforge.xquartz:0 and Athena is working fine on my system.
George
On Tue, Sep 22, 2015 at 6:50 AM, Alison Tebo
wrote: Hi Raimundo (and R?mi),
I'm not a pro here but, have you installed xorg-server? It seems like your $DISPLAY variables are not being set correctly. The problem might be XQuartz. The demeter build from Macports doesn't know to use that X windows server (everything is installed in different places) and is looking for the macports version. Your $DISPLAY variable should be something with org.macports rather than org.macosforge.xquartz:0. FWIW, xorg-server is maintained by and updated with XQuartz.
Good luck,
Alison
On Mon, Sep 21, 2015 at 10:15 PM, Raimundo Lora Serrano < rloraserrano@infis.ufu.br> wrote:
Dear all,
I have the same problems installing Athena/Demeter on Yosemite (10.10.5) as Remi. Also in my case (as for R?mi) - I use the R?mi?s message edited as required to my softwares? versions:
Athena launches well from the Terminal, I have the main window (perl5.22), I can import data or load former athena projects etc, but there is no plot window. No error message shows up in the terminal.
I?ve *carefully* installed Macports 2.3.3, i.e., installed Xcode Version 7.0 (7A220), agreed to Xcode licence, and installed Macports for OS X 10.10 Yosemite. I runned the "sudo port -v selfupdate" command Then "sudo port install demeter-devel?
And port upgrade outdated to ensure everything is up to date Plus, I have XQuartz 2.7.7 installed.
I also uninstalled and reinstalled macports (and Xcode, xquartz) but the problem remains.
By typing echo $DISPLAY /private/tmp/com.apple.launchd.RgzrDheMAp/org.macosforge.xquartz:0
Any guess? Many thanks in advance. Raimundo
Em 21/09/2015, ?(s) 14:00, ifeffit-request@millenia.cars.aps.anl.gov escreveu:
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Today's Topics:
1. No plot window in Athena/Demeter on Mac OS X Yosemite (R?mi BELISSONT)
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Message: 1 Date: Mon, 21 Sep 2015 14:57:34 +0200 From: R?mi BELISSONT
To: ifeffit@millenia.cars.aps.anl.gov Subject: [Ifeffit] No plot window in Athena/Demeter on Mac OS X Yosemite Message-ID: <6D35429A-8B4F-42FA-BA4D-92407447F7A9@univ-lorraine.fr> Content-Type: text/plain; charset="utf-8" Hello,
I?m currently using Athena using the iXAFS 3.0.3 application, which is ? if I?ve well understood ? an old version no longer updated ( http://cars9.uchicago.edu/ifeffit/Downloads < http://cars9.uchicago.edu/ifeffit/Downloads>).
So, today I tried to install the current version by installing Demeter, following the procedure detailed at http://bruceravel.github.io/demeter/ http://bruceravel.github.io/demeter/.
I?ve *carefully* installed Macports 2.3.3, i.e., installed Xcode 6.4, agreed to Xcode licence, and installed Macports for OS X 10.10 Yosemite. I runned the sudo port -v self update command Then sudo port install xorg-server demeter And port upgrade outdated to ensure everything is up to date Plus, I have XQuartz 2.7.7 installed.
Here is my problem. Athena launches well from the Terminal (in home directory), I have the main window (pearl5.22), I can import data or load former athena projects etc, but there is no plot window. No error message shows up in the terminal. However I can still produce a PNG of the plot I?m desperately trying to see via Plots/Save last plot as...
I?ve seen a similar thread concerning such an issue in OS X Mavericks but couldn?t solve it from what was explained there ( http://millenia.cars.aps.anl.gov/pipermail/ifeffit/2014-January/011644.html < http://millenia.cars.aps.anl.gov/pipermail/ifeffit/2014-January/011644.html>). I guess the issue comes from the DISPLAY environment but I don?t have any clue to solve that.
Thank you in advance for your help, I think it may be useful for other users,
Kind regards,
R?mi
??????????????????????????????????????? R?mi Belissont Ph.D. Student | Universit? de Lorraine ? Labex R21
GeoRessources CNRS-UMR 7359, Facult? des Sciences BP 70239, 54506 Vandoeuvre-l?s-Nancy Cedex, France Phone +33 (0)3 83 68 47 14
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Raimundo Lora Serrano