Hi there, I begin by examining phosphorus adsorption by goethite, hematite, and gibbsite. Why is it difficult, if not impossible, to obtain EXAFS spectra at the P-K edge that can be properly used, i.e., spectra with a high signal-to-noise ratio, especially for dilute samples? Would it be possible to use arsenic as a phosphorus proxy to get conclusions from As K-edge EXAFS data that could be extended to P? Thank you.
It's not impossible, but difficult for a couple of reasons: 1. Not too many beamlines can do it. It's hard for soft X-ray beamlines and soft for hard X-ray beamlines. Air absorption is significant. If a Si DCM is used, the Bragg angle has to be higher than many monochromators can reach. 2. The spectrum typically features a tall white line, which is very subject to overabsorption in concentrated samples. The small absorption depths make it hard to do transmission without running into thickness/hole effects. Harmonic contamination can be an issue. 3. If you work in fluorescence, you have the low fluorescence yield to contend with, as well as absorption in a detector window of typical thickness. The energy resolution of a typical SDD is insufficient to cleanly separate the fluorescence from elastic. That's not to say that it can't be done. It has. It's just a bit more difficult than, for instance, Fe. As to substituting As for P, that seems dangerous. For one thing, the atoms are different sizes. You may recall that sometime back there was a flap over some bacteria that supposedly had been transitioned from using P to using As for life functions. This turned out to be bogus. I gather that ATAs doesn't work the same as ATP, for instance. It's not an isomorphous replacement. mam On 9/13/2023 12:03 PM, Marcelo Eduardo Alves wrote:
Hi there,
I begin by examining phosphorus adsorption by goethite, hematite, and gibbsite.
Why is it difficult, if not impossible, to obtain EXAFS spectra at the P-K edge that can be properly used, i.e., spectra with a high signal-to-noise ratio, especially for dilute samples?
Would it be possible to use arsenic as a phosphorus proxy to get conclusions from As K-edge EXAFS data that could be extended to P?
Thank you.
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In my experience the main difficulties with EXAFS on P (phosphate) come from two factors (not signal to noise, it's not hard to get a nice smooth line, but): 1) You've got 4 O atoms, guaranteed, so any other signal will be small and on top of that very strong signal generated from the first-neighbor O Unfortunately, 2) You have very limited data range, either due to instrumental limitations, or due to interference from sulfur Don't get me wrong I still have some data sitting around and I'd love to try P EXAFS analysis on it just to try and grasp that brass ring but...It's not the easiest task ever. If you want good data quality "scan longer" is always an option. Some might think it's crazy but I do think I have some P XAS data where I took 30 or 60 scans, maybe overnight or something. The scans are so short that repeats are easy. Hope this commentary is helpful. Mike
On Sep 14, 2023, at 07:04, Marcelo Eduardo Alves
wrote: Hi there,
I begin by examining phosphorus adsorption by goethite, hematite, and gibbsite.
Why is it difficult, if not impossible, to obtain EXAFS spectra at the P-K edge that can be properly used, i.e., spectra with a high signal-to-noise ratio, especially for dilute samples?
Would it be possible to use arsenic as a phosphorus proxy to get conclusions from As K-edge EXAFS data that could be extended to P?
Thank you.
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Good points. At these low energies, an EXAFS range is a large fraction of the total energy range, so there tends to be a lot of curvature of baselines and post-edges. True about the 4O 1NN shell that dominates, but the same happens with As. All the interesting stuff is in the higher shells. Most data I've seen has been XANES. mam On 9/13/2023 12:42 PM, Mike Massey wrote:
In my experience the main difficulties with EXAFS on P (phosphate) come from two factors (not signal to noise, it's not hard to get a nice smooth line, but):
1) You've got 4 O atoms, guaranteed, so any other signal will be small and on top of that very strong signal generated from the first-neighbor O
Unfortunately,
2) You have very limited data range, either due to instrumental limitations, or due to interference from sulfur
Don't get me wrong I still have some data sitting around and I'd love to try P EXAFS analysis on it just to try and grasp that brass ring but...It's not the easiest task ever.
If you want good data quality "scan longer" is always an option. Some might think it's crazy but I do think I have some P XAS data where I took 30 or 60 scans, maybe overnight or something. The scans are so short that repeats are easy.
Hope this commentary is helpful.
Mike
On Sep 14, 2023, at 07:04, Marcelo Eduardo Alves
wrote:
Hi there,
I begin by examining phosphorus adsorption by goethite, hematite, and gibbsite.
Why is it difficult, if not impossible, to obtain EXAFS spectra at the P-K edge that can be properly used, i.e., spectra with a high signal-to-noise ratio, especially for dilute samples?
Would it be possible to use arsenic as a phosphorus proxy to get conclusions from As K-edge EXAFS data that could be extended to P?
Thank you.
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Hi, You could try X-ray emission rather than EXAFS. It has shown some success in showing changes in phosphate environment with bonding environment. e.g. https://pubs.rsc.org/en/content/articlelanding/2021/sc/d1sc01266e cheers, -R. On 2023-09-13 12:47 p.m., matthew marcus wrote:
Good points. At these low energies, an EXAFS range is a large fraction of the total energy range, so there tends to be a lot of curvature of baselines and post-edges. True about the 4O 1NN shell that dominates, but the same happens with As. All the interesting stuff is in the higher shells. Most data I've seen has been XANES. mam
On 9/13/2023 12:42 PM, Mike Massey wrote:
In my experience the main difficulties with EXAFS on P (phosphate) come from two factors (not signal to noise, it's not hard to get a nice smooth line, but):
1) You've got 4 O atoms, guaranteed, so any other signal will be small and on top of that very strong signal generated from the first-neighbor O
Unfortunately,
2) You have very limited data range, either due to instrumental limitations, or due to interference from sulfur
Don't get me wrong I still have some data sitting around and I'd love to try P EXAFS analysis on it just to try and grasp that brass ring but...It's not the easiest task ever.
If you want good data quality "scan longer" is always an option. Some might think it's crazy but I do think I have some P XAS data where I took 30 or 60 scans, maybe overnight or something. The scans are so short that repeats are easy.
Hope this commentary is helpful.
Mike
On Sep 14, 2023, at 07:04, Marcelo Eduardo Alves
wrote:
Hi there,
I begin by examining phosphorus adsorption by goethite, hematite, and gibbsite.
Why is it difficult, if not impossible, to obtain EXAFS spectra at the P-K edge that can be properly used, i.e., spectra with a high signal-to-noise ratio, especially for dilute samples?
Would it be possible to use arsenic as a phosphorus proxy to get conclusions from As K-edge EXAFS data that could be extended to P?
Thank you.
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The other difficulty I have experienced with P EXAFS is that a lot of the second-shell backscatterers are fairly weak, so picking that signal out is pretty difficult. I have some spectra of minerals and that's where I've wanted to start with P EXAFS (since the structures are well-constrained). But as has been mentioned, low-frequency oscillations and background subtraction have massive impacts on the P K-edge EXAFS function (tested this by taking spectra of the same sample during different runs and getting different EXAFS due to slightly different background). I don't think it's necessarily impossible, I just personally put it in the not-right-now basket.
On Sep 14, 2023, at 07:42, Mike Massey
wrote: In my experience the main difficulties with EXAFS on P (phosphate) come from two factors (not signal to noise, it's not hard to get a nice smooth line, but):
1) You've got 4 O atoms, guaranteed, so any other signal will be small and on top of that very strong signal generated from the first-neighbor O
Unfortunately,
2) You have very limited data range, either due to instrumental limitations, or due to interference from sulfur
Don't get me wrong I still have some data sitting around and I'd love to try P EXAFS analysis on it just to try and grasp that brass ring but...It's not the easiest task ever.
If you want good data quality "scan longer" is always an option. Some might think it's crazy but I do think I have some P XAS data where I took 30 or 60 scans, maybe overnight or something. The scans are so short that repeats are easy.
Hope this commentary is helpful.
Mike
On Sep 14, 2023, at 07:04, Marcelo Eduardo Alves
wrote: Hi there,
I begin by examining phosphorus adsorption by goethite, hematite, and gibbsite.
Why is it difficult, if not impossible, to obtain EXAFS spectra at the P-K edge that can be properly used, i.e., spectra with a high signal-to-noise ratio, especially for dilute samples?
Would it be possible to use arsenic as a phosphorus proxy to get conclusions from As K-edge EXAFS data that could be extended to P?
Thank you.
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some additional comments:
- it is a bit tricky to operate ionisation chambers at this low energies (low pressure)
- some Beamlines have issues with higher harmonics (high angles of mirrors to get low cut off energies)
- preparation of good sample is tricky
best regards
Stefan Mangold
Am 14.09.2023 um 06:09 schrieb Mike Massey
participants (5)
-
Mangold, Stefan (IPS)
-
Marcelo Eduardo Alves
-
matthew marcus
-
Mike Massey
-
Robert Gordon