Smoothing aligned data in Athena
Dear All, I have a bug to report when using the Athena data smoothing feature with aligned data. Exemplar project and log files are attached, along with a screenshot. I am running Windows 10 x64 with Athena 0.9.25 x64. Summary: When using the data smoothing feature in Athena with data that has previously been aligned using the alignment feature, the smoothing is performed on the non-aligned data, and the resulting, processed dataset is shifted in E. Recipe: Open Athena Import a dataset that has a reference channel Import a second dataset with reference Import a standard dataset, with a slightly off alignment wrt to the first two datasets (I imported all three from Athena projects, rather than raw datafiles) Use the alignment tool to align the reference channel of one of the datasets to the standard (I used the automatic alignment) Go to the smoothing tool. You can immediately see that the smoothed curve is in the wrong place for the aligned dataset. The dataset that wasn't aligned will appear correctly Many thanks, Ian ---- Ian Godfrey PhD Student, UCL/JAIST Programme Industrial Doctorate Centre in Molecular Modelling and Materials Science, Department of Chemistry, University College London and School of Materials Science, Japan Advanced Institute of Science and Technology i.godfrey@ucl.ac.ukmailto:i.godfrey@ucl.ac.uk i.godfrey@jaist.ac.jpmailto:i.godfrey@jaist.ac.jp
Hi Ian, Thank you for a very clear and well articulated bug report. It is much appreciated. This was a simple one to fix. When I implemented the boxcar filter in Athena, I neglected to copy the energy shift value from the noisy group to the smoothed group. Oops! I just pushed a fix to github which will be included in the next windows installer. If you would like to mend the copy of Athena on your computer, it's a small edit, as shown here: https://github.com/bruceravel/demeter/commit/a84e5fb605cef26dd4be42bba469242... Thanks, B On 09/28/2016 11:33 AM, Godfrey, Ian wrote:
Dear All,
I have a bug to report when using the Athena data smoothing feature with aligned data. Exemplar project and log files are attached, along with a screenshot. I am running Windows 10 x64 with Athena 0.9.25 x64.
Summary:
When using the data smoothing feature in Athena with data that has previously been aligned using the alignment feature, the smoothing is performed on the non-aligned data, and the resulting, processed dataset is shifted in E.
Recipe:
Open Athena
Import a dataset that has a reference channel
Import a second dataset with reference
Import a standard dataset, with a slightly off alignment wrt to the first two datasets (I imported all three from Athena projects, rather than raw datafiles)
Use the alignment tool to align the reference channel of one of the datasets to the standard (I used the automatic alignment)
Go to the smoothing tool. You can immediately see that the smoothed curve is in the wrong place for the aligned dataset.
The dataset that wasn't aligned will appear correctly
Many thanks,
Ian
----
Ian Godfrey
PhD Student,
UCL/JAIST Programme
Industrial Doctorate Centre in Molecular Modelling and Materials Science,
Department of Chemistry,
University College London
and
School of Materials Science,
Japan Advanced Institute of Science and Technology
i.godfrey@ucl.ac.uk mailto:i.godfrey@ucl.ac.uk i.godfrey@jaist.ac.jp mailto:i.godfrey@jaist.ac.jp
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-- Bruce Ravel ------------------------------------ bravel@bnl.gov National Institute of Standards and Technology Synchrotron Science Group at NSLS-II Building 743, Room 114 Upton NY, 11973 Homepage: http://bruceravel.github.io/home/ Software: https://github.com/bruceravel Demeter: http://bruceravel.github.io/demeter/
participants (2)
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Bruce Ravel
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Godfrey, Ian