Frank,
This is what I get for the following terminal inputs:
*169-231-92-234:~ jwc137$ port installed ifeffit p5.16-ifeffit
demeter-devel*
The following ports are currently installed:
demeter-devel @0.9.20pre10_0
demeter-devel @0.9.20-2014-06-06_0
ifeffit @1.2.11c_0+gcc48
ifeffit @1.2.13_0+gcc48 (active)
p5.16-ifeffit @1.0.0_0
p5.16-ifeffit @2_0 (active)
*169-231-92-234:~ jwc137$ ls -l /opt/local/bin/athena*
ls: /opt/local/bin/athena: No such file or directory
*169-231-92-234:~ jwc137$ ls -l /opt/local/bin/atoms*
ls: /opt/local/bin/atoms: No such file or directory
169-231-92-234:~ jwc137$
ᐧ
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Jennifer L.W. Carter
Assistant Professor
Department of Materials Science and Engineering
Case Western Reserve University
*500B White Building*
*10900 Euclid Ave.Cleveland, OH 44106-4901phone: (216)
368-4214email: jennifer.w.carter@case.edu
Jennifer,
There is nothing else to do.
What is the output of the following 3 commands?
port installed ifeffit p5.16-ifeffit demeter-devel ls -l /opt/local/bin/athena ls -l /opt/local/bin/atoms
Here is the my output (on 2 different computers):
$ port installed ifeffit p5.16-ifeffit demeter-devel The following ports are currently installed: demeter-devel @0.9.20pre10_0 (active) ifeffit @1.2.13_0+gcc48 (active) p5.16-ifeffit @2_0 (active)
$ ls -l /opt/local/bin/athena lrwxr-xr-x 1 root admin 43 Jul 14 10:53 /opt/local/bin/athena -> /opt/local/libexec/perl5.16/sitebin/dathena
$ ls -l /opt/local/bin/atoms lrwxr-xr-x 1 root admin 45 Jul 14 10:53 /opt/local/bin/atoms -> /opt/local/libexec/perl5.16/sitebin/atoms-gui
As for that perl command, make sure you are using Macports perl.
$ which perl /opt/local/bin/perl
-Frank
On Jul 14, 2014, at 2:47 PM, Jennifer Carter
wrote: Frank,
I followed the instructions for updating a current version, but now when I type "athena" or "atoms" in the terminal I get the message "command not found" am I missing a step?
running perl -e 'use Demeter; print $INC{"Demeter.pm"}, $/'
indicates that nothing was installed.
Thanks Jennifer ᐧ
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Jennifer L.W. Carter
Assistant Professor Department of Materials Science and Engineering Case Western Reserve University
*500B White Building*
*10900 Euclid Ave. Cleveland, OH 44106-4901 phone: (216) 368-4214 email: jennifer.w.carter@case.edu
* On Mon, Jul 14, 2014 at 1:04 PM, Schima, Frank
wrote: Mac OS X users,
Thanks to help from Bruce Ravel and Matt Newville, I have updated ifeffit and Demeter-devel in Macports to fix a number of problems reported.
To update from your current version type the following:
sudo port selfupdate sudo port upgrade outdated
To install from scratch after installing Macports [1]:
sudo port selfupdate sudo port install demeter-devel
When done, your should see the following ports installed:
$ port installed ifeffit p5.16-ifeffit demeter-devel The following ports are currently installed: demeter-devel @0.9.20pre10_0 (active) ifeffit @1.2.13_0+gcc48 (active) p5.16-ifeffit @2_0 (active)
Please reply to the list (NOT to me directly) about how this works for you.
Cheers! Frank
[1] https://www.macports.org/install.php
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