Re: [Ifeffit] No plot window in Athena/Demeter on Mac OS X Yosemite

23 Sep 2015


      Thank you George! Problem solved! :)
...
Em 22/09/2015, à(s) 19:13, ifeffit-request@millenia.cars.aps.anl.gov escreveu:
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Today's Topics:
1. Re: No plot window in Athena/Demeter on Mac OS X Yosemite
     (Raimundo Lora Serrano)
  2. Re: No plot window in Athena/Demeter on Mac OS X Yosemite
     (Bruce Ravel)
  3. Re: No plot window in Athena/Demeter on Mac OS X Yosemite
     (George Sterbinsky)
----------------------------------------------------------------------
Message: 1
Date: Tue, 22 Sep 2015 18:03:14 -0300
From: Raimundo Lora Serrano 
To: ifeffit@millenia.cars.aps.anl.gov
Subject: Re: [Ifeffit] No plot window in Athena/Demeter on Mac OS X
  Yosemite
Message-ID: 
Content-Type: text/plain; charset=utf-8
Bruce,
I did what you suggested.
...
* Can you run gnuplot from the command line?
Yes.
...
* If so, what is the default terminal?  To find out, do this at the
  gnuplot command line:  "show terminal?
?aqua? is the default terminal.
...
* If the default terminal is something other than "X11", "wxt", or
  "qt", can you reset it?  That is done at the gnuplot command line
  by, for instance, "set terminal wxt?
I reset as suggested. gnuplot is working fine. The plot is generated. Even with ?aqua?, the plot is visualized.
...
* Can you make a plot?  To find out, plot a sine wave at the gnuplot
  command line with "plot sin(x)?
Yes. I just tested and left the gnuplot window opened and ran ?athena? in another terminal, but there is no communication with gnuplot. Still, no data is plotted.
...
Em 22/09/2015, ?(s) 16:53, ifeffit-request@millenia.cars.aps.anl.gov escreveu:
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Today's Topics:
1. Re: No plot window in Athena/Demeter on Mac OS X Yosemite
    (Raimundo Lora Serrano)
 2. Re: No plot window in Athena/Demeter on Mac OS X Yosemite
    (Bruce Ravel)
----------------------------------------------------------------------
Message: 1
Date: Tue, 22 Sep 2015 16:38:40 -0300
From: Raimundo Lora Serrano 
To: ifeffit@millenia.cars.aps.anl.gov
Subject: Re: [Ifeffit] No plot window in Athena/Demeter on Mac OS X
  Yosemite
Message-ID: <1F27C0D9-A926-490A-A33B-2A46DB8FCEDD@infis.ufu.br>
Content-Type: text/plain; charset="utf-8"
Hi again,
I just reinstalled ?xorg-server demeter?, now I get:
/private/tmp/com.apple.launchd.lXiE4HyZ2W/org.macports:0
but there is no plot window. The problem remains.
...
Em 22/09/2015, ?(s) 14:00, ifeffit-request@millenia.cars.aps.anl.gov escreveu:
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Today's Topics:
1. Re: No plot window in Athena/Demeter on Mac OS X Yosemite
   (George Sterbinsky)
----------------------------------------------------------------------
Message: 1
Date: Tue, 22 Sep 2015 10:05:29 -0500
From: George Sterbinsky 
To: XAFS Analysis using Ifeffit 
Subject: Re: [Ifeffit] No plot window in Athena/Demeter on Mac OS X
  Yosemite
Message-ID:
  
Content-Type: text/plain; charset="utf-8"
Hi All,
The result I get is
/private/tmp/com.apple.launchd.a2i2wnuP2l/org.macosforge.xquartz:0 and
Athena is working fine on my system.
George
On Tue, Sep 22, 2015 at 6:50 AM, Alison Tebo  wrote:
...
Hi Raimundo (and R?mi),
I'm not a pro here but, have you installed xorg-server? It seems like your
$DISPLAY variables are not being set correctly. The problem might be
XQuartz. The demeter build from Macports doesn't know to use that X windows
server (everything is installed in different places) and is looking for the
macports version. Your $DISPLAY variable should be something with
org.macports rather than org.macosforge.xquartz:0. FWIW, xorg-server is
maintained by and updated with XQuartz.
Good luck,
Alison
On Mon, Sep 21, 2015 at 10:15 PM, Raimundo Lora Serrano <
rloraserrano@infis.ufu.br> wrote:
...
Dear all,
I have the same problems installing Athena/Demeter on Yosemite (10.10.5)
as Remi.
Also in my case (as for R?mi) - I use the R?mi?s message edited as
required to my softwares? versions:
...
Athena launches well from the Terminal, I have the
main window (perl5.22), I can import data or load former athena projects
etc, but there is no plot window. No error message shows up in the
terminal.
...
I?ve *carefully* installed Macports 2.3.3, i.e., installed Xcode Version 7.0 (7A220),
agreed to Xcode licence, and installed Macports for OS X 10.10 Yosemite.
I runned the "sudo port -v selfupdate" command
Then "sudo port install demeter-devel?
...
And port upgrade outdated to ensure everything is up to date
Plus, I have XQuartz 2.7.7 installed.
I also uninstalled and reinstalled macports (and Xcode, xquartz) but the
problem remains.
By typing
echo $DISPLAY
/private/tmp/com.apple.launchd.RgzrDheMAp/org.macosforge.xquartz:0
Any guess?
Many thanks in advance.
Raimundo
Em 21/09/2015, ?(s) 14:00, ifeffit-request@millenia.cars.aps.anl.gov
escreveu:
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Today's Topics:
1. No plot window in Athena/Demeter on Mac OS X Yosemite
  (R?mi BELISSONT)
----------------------------------------------------------------------
Message: 1
Date: Mon, 21 Sep 2015 14:57:34 +0200
From: R?mi BELISSONT 
To: ifeffit@millenia.cars.aps.anl.gov
Subject: [Ifeffit] No plot window in Athena/Demeter on Mac OS X
Yosemite
Message-ID: <6D35429A-8B4F-42FA-BA4D-92407447F7A9@univ-lorraine.fr>
Content-Type: text/plain; charset="utf-8"
Hello,
I?m currently using Athena using the iXAFS 3.0.3 application, which is ?
if I?ve well understood ? an old version no longer updated (
http://cars9.uchicago.edu/ifeffit/Downloads <
http://cars9.uchicago.edu/ifeffit/Downloads>).
So, today I tried to install the current version by installing Demeter,
following the procedure detailed at http://bruceravel.github.io/demeter/
http://bruceravel.github.io/demeter/.
I?ve *carefully* installed Macports 2.3.3, i.e., installed Xcode 6.4,
agreed to Xcode licence, and installed Macports for OS X 10.10 Yosemite.
I runned the sudo port -v self update command
Then sudo port install xorg-server demeter
And port upgrade outdated to ensure everything is up to date
Plus, I have XQuartz 2.7.7 installed.
Here is my problem.
Athena launches well from the Terminal (in home directory), I have the
main window (pearl5.22), I can import data or load former athena projects
etc, but there is no plot window. No error message shows up in the
terminal. However I can still produce a PNG of the plot I?m desperately
trying to see via Plots/Save last plot as...
I?ve seen a similar thread concerning such an issue in OS X Mavericks but
couldn?t solve it from what was explained there (
http://millenia.cars.aps.anl.gov/pipermail/ifeffit/2014-January/011644.html
<
http://millenia.cars.aps.anl.gov/pipermail/ifeffit/2014-January/011644.html>).
I guess the issue comes from the DISPLAY environment but I don?t have any
clue to solve that.
Thank you in advance for your help,
I think it may be useful for other users,
Kind regards,
R?mi
???????????????????????????????????????
R?mi Belissont
Ph.D. Student | Universit? de Lorraine ? Labex R21
GeoRessources
CNRS-UMR 7359, Facult? des Sciences
BP 70239, 54506 Vandoeuvre-l?s-Nancy Cedex, France
Phone +33 (0)3 83 68 47 14
Centre de Recherches P?trographiques et G?ochimiques
CNRS-UMR 7358, 15 Rue Notre Dame des Pauvres
BP 20, 54501 Vandeuvre-l?s-Nancy Cedex, France