Hi Matt,
Actually we did run . /Applications/iXAFS.app/Contents/Resources/local/bin/iff_init.sh (I was just wondering if it was still required).
Hopefully the following output will be clearer than my prose. Line 5 in "iff = Ifeffit.Ifeffit()". The problem seems to be access to "/Users/Newville/Codes/ifeffit/local/share/ifeffit" while running Ifeffit.Ifeffit().
Thanks!
Joel + Barb
Last login: Fri Sep 10 08:14:26 on ttys004
JoelMacBook-Silver:~ joelb$ echo $PATH
/opt/local/bin:/opt/local/sbin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/bin:/usr/X11/bin
JoelMacBook-Silver:~ joelb$ . /Applications/iXAFS.app/Contents/Resources/local/bin/iff_init.sh
JoelMacBook-Silver:~ joelb$ echo $PATH
/Applications/iXAFS.app/Contents/Resources/local/bin:/opt/local/bin:/opt/local/sbin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/bin:/usr/X11/bin
JoelMacBook-Silver:~ joelb$ cd /Users/joelb/data_ifeffit/APS-April08-Pascal/python
JoelMacBook-Silver:python joelb$ python aps-12p9mLiCl.py
failed to load ifeffit library libifeffit.dylib
/Users/Newville/Codes/ifeffit/local/share/ifeffit:/Applications/iXAFS.app/Contents/Resources/local/bin:/opt/local/bin:/opt/local/sbin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/bin:/usr/X11/bin
Traceback (most recent call last):
File "aps-12p9mLiCl.py", line 5, in <module>
iff = Ifeffit.Ifeffit()
File "/Library/Python/2.6/site-packages/Ifeffit/Ifeffit.py", line 79, in __init__
raise ImportError('Cannot load ifeffit library')
ImportError: Cannot load ifeffit library
JoelMacBook-Silver:python joelb$ echo $PATH
/Applications/iXAFS.app/Contents/Resources/local/bin:/opt/local/bin:/opt/local/sbin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/bin:/usr/X11/bin
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Message: 4
Date: Thu, 9 Sep 2010 10:12:09 -0500
From: Matt Newville
Works great on 10.6 for us too. Thanks a million times, and fingers crossed for finding the error in 10.5 !
We tried the python scripting, but apparently a /Users/Newville still lurks in there.
Running the aps-12p9mLiCl.py ?script
1. #!/usr/bin/python 2. 3. import math 4. import Ifeffit 5. iff = Ifeffit.Ifeffit()
gives the following error:
bash-3.2$ python aps-12p9mLiCl.py ?failed to load ifeffit library ?libifeffit.dylib /Users/Newville/Codes/ifeffit/local/share/ifeffit:/opt/local/bin:/opt/local/sbin:/opt/pgi/osx86/10.4/bin:/Users/joelb/Public/XDS/XDS-OSX_Intel:/Applications/iXAFS.app/Contents/Resources/local/bin:/opt/local/bin:/opt/local/sbin:/sw/bin:/sw/sbin:/opt/local/bin:/opt/local/sbin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/bin:/usr/X11/bin:/usr/X11R6/bin:/usr/local/lib:/Users/joelb/Desktop/FitYK/:/usr/local/lib/:/sw/lib/:/sw/include/readline/:/unix/Molecular Dynamics/moldy-2.16e:/Users/joelb/Public/XDS/XDS-OSX_Intel:/Users/joelb/Desktop/fdmnes:/usr/local/lib:/Users/joelb/Desktop/FitYK/:/usr/local/lib/:/sw/lib/:/sw/include/readline/:/unix/Molecular Dynamics/moldy-2.16e:/Users/joelb/Public/XDS/XDS-OSX_Intel:/Users/joelb/Desktop/fdmnes:/Applications/iXAFS.app/Contents/Resources/local/bin Traceback (most recent call last): ?File "aps-12p9mLiCl.py", line 5, in <module> ? ?iff = Ifeffit.Ifeffit() ?File "/Library/Python/2.6/site-packages/Ifeffit/Ifeffit.py", line 79, in __init__ ? ?raise ImportError('Cannot load ifeffit library') ImportError: Cannot load ifeffit library
I tried to add /Applications/iXAFS.app/Contents/Resources/local/lib to PATH (there's a libifeffit.dylib there), but that did not help.
Also notice that my PATH variables have been duplicated. This happens because I still have '. /Applications/iXAFS.app/Contents/Resources/local/bin/iff_init.sh' in my '.profile'. Do I need to keep this? If so, it would be nice to fix iff_init.sh too :-)
Thanks,
Joel + Barb