[Ifeffit] No plot window in Athena/Demeter on Mac OS X Yosemite
Raimundo Lora Serrano
rloraserrano at infis.ufu.br
Tue Sep 22 16:03:14 CDT 2015
Bruce,
I did what you suggested.
> * Can you run gnuplot from the command line?
Yes.
>
> * If so, what is the default terminal? To find out, do this at the
> gnuplot command line: "show terminal”
“aqua” is the default terminal.
>
> * If the default terminal is something other than "X11", "wxt", or
> "qt", can you reset it? That is done at the gnuplot command line
> by, for instance, "set terminal wxt”
I reset as suggested. gnuplot is working fine. The plot is generated. Even with “aqua”, the plot is visualized.
> * Can you make a plot? To find out, plot a sine wave at the gnuplot
> command line with "plot sin(x)”
Yes. I just tested and left the gnuplot window opened and ran “athena” in another terminal, but there is no communication with gnuplot. Still, no data is plotted.
> Em 22/09/2015, à(s) 16:53, ifeffit-request at millenia.cars.aps.anl.gov escreveu:
>
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> Today's Topics:
>
> 1. Re: No plot window in Athena/Demeter on Mac OS X Yosemite
> (Raimundo Lora Serrano)
> 2. Re: No plot window in Athena/Demeter on Mac OS X Yosemite
> (Bruce Ravel)
>
>
> ----------------------------------------------------------------------
>
> Message: 1
> Date: Tue, 22 Sep 2015 16:38:40 -0300
> From: Raimundo Lora Serrano <rloraserrano at infis.ufu.br>
> To: ifeffit at millenia.cars.aps.anl.gov
> Subject: Re: [Ifeffit] No plot window in Athena/Demeter on Mac OS X
> Yosemite
> Message-ID: <1F27C0D9-A926-490A-A33B-2A46DB8FCEDD at infis.ufu.br>
> Content-Type: text/plain; charset="utf-8"
>
> Hi again,
> I just reinstalled ?xorg-server demeter?, now I get:
> /private/tmp/com.apple.launchd.lXiE4HyZ2W/org.macports:0
>
> but there is no plot window. The problem remains.
>
>
>> Em 22/09/2015, ?(s) 14:00, ifeffit-request at millenia.cars.aps.anl.gov escreveu:
>>
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>>
>> 1. Re: No plot window in Athena/Demeter on Mac OS X Yosemite
>> (George Sterbinsky)
>>
>>
>> ----------------------------------------------------------------------
>>
>> Message: 1
>> Date: Tue, 22 Sep 2015 10:05:29 -0500
>> From: George Sterbinsky <GeorgeSterbinsky at u.northwestern.edu>
>> To: XAFS Analysis using Ifeffit <ifeffit at millenia.cars.aps.anl.gov>
>> Subject: Re: [Ifeffit] No plot window in Athena/Demeter on Mac OS X
>> Yosemite
>> Message-ID:
>> <CALoY8Yx1Y4dodQ7ywgUFX5wuLEnauF9ib9LjJQLyi_Awf-T1Kg at mail.gmail.com>
>> Content-Type: text/plain; charset="utf-8"
>>
>> Hi All,
>>
>> The result I get is
>> /private/tmp/com.apple.launchd.a2i2wnuP2l/org.macosforge.xquartz:0 and
>> Athena is working fine on my system.
>>
>> George
>>
>> On Tue, Sep 22, 2015 at 6:50 AM, Alison Tebo <agtebo at umich.edu> wrote:
>>
>>> Hi Raimundo (and R?mi),
>>>
>>> I'm not a pro here but, have you installed xorg-server? It seems like your
>>> $DISPLAY variables are not being set correctly. The problem might be
>>> XQuartz. The demeter build from Macports doesn't know to use that X windows
>>> server (everything is installed in different places) and is looking for the
>>> macports version. Your $DISPLAY variable should be something with
>>> org.macports rather than org.macosforge.xquartz:0. FWIW, xorg-server is
>>> maintained by and updated with XQuartz.
>>>
>>> Good luck,
>>>
>>> Alison
>>>
>>> On Mon, Sep 21, 2015 at 10:15 PM, Raimundo Lora Serrano <
>>> rloraserrano at infis.ufu.br> wrote:
>>>
>>>> Dear all,
>>>>
>>>> I have the same problems installing Athena/Demeter on Yosemite (10.10.5)
>>>> as Remi.
>>>> Also in my case (as for R?mi) - I use the R?mi?s message edited as
>>>> required to my softwares? versions:
>>>>
>>>>> Athena launches well from the Terminal, I have the
>>>>> main window (perl5.22), I can import data or load former athena projects
>>>>> etc, but there is no plot window. No error message shows up in the
>>>>> terminal.
>>>>
>>>>
>>>>> I?ve *carefully* installed Macports 2.3.3, i.e., installed Xcode Version 7.0 (7A220),
>>>>> agreed to Xcode licence, and installed Macports for OS X 10.10 Yosemite.
>>>>> I runned the "sudo port -v selfupdate" command
>>>>> Then "sudo port install demeter-devel?
>>>>
>>>>> And port upgrade outdated to ensure everything is up to date
>>>>> Plus, I have XQuartz 2.7.7 installed.
>>>>
>>>>
>>>> I also uninstalled and reinstalled macports (and Xcode, xquartz) but the
>>>> problem remains.
>>>>
>>>> By typing
>>>> echo $DISPLAY
>>>> /private/tmp/com.apple.launchd.RgzrDheMAp/org.macosforge.xquartz:0
>>>>
>>>> Any guess?
>>>> Many thanks in advance.
>>>> Raimundo
>>>>
>>>>
>>>>
>>>>
>>>> Em 21/09/2015, ?(s) 14:00, ifeffit-request at millenia.cars.aps.anl.gov
>>>> escreveu:
>>>>
>>>> Send Ifeffit mailing list submissions to
>>>> ifeffit at millenia.cars.aps.anl.gov
>>>>
>>>> To subscribe or unsubscribe via the World Wide Web, visit
>>>> http://millenia.cars.aps.anl.gov/mailman/listinfo/ifeffit
>>>> or, via email, send a message with subject or body 'help' to
>>>> ifeffit-request at millenia.cars.aps.anl.gov
>>>>
>>>> You can reach the person managing the list at
>>>> ifeffit-owner at millenia.cars.aps.anl.gov
>>>>
>>>> When replying, please edit your Subject line so it is more specific
>>>> than "Re: Contents of Ifeffit digest..."
>>>>
>>>>
>>>> Today's Topics:
>>>>
>>>> 1. No plot window in Athena/Demeter on Mac OS X Yosemite
>>>> (R?mi BELISSONT)
>>>>
>>>>
>>>> ----------------------------------------------------------------------
>>>>
>>>> Message: 1
>>>> Date: Mon, 21 Sep 2015 14:57:34 +0200
>>>> From: R?mi BELISSONT <remi.belissont at univ-lorraine.fr>
>>>> To: ifeffit at millenia.cars.aps.anl.gov
>>>> Subject: [Ifeffit] No plot window in Athena/Demeter on Mac OS X
>>>> Yosemite
>>>> Message-ID: <6D35429A-8B4F-42FA-BA4D-92407447F7A9 at univ-lorraine.fr>
>>>> Content-Type: text/plain; charset="utf-8"
>>>>
>>>> Hello,
>>>>
>>>> I?m currently using Athena using the iXAFS 3.0.3 application, which is ?
>>>> if I?ve well understood ? an old version no longer updated (
>>>> http://cars9.uchicago.edu/ifeffit/Downloads <
>>>> http://cars9.uchicago.edu/ifeffit/Downloads>).
>>>>
>>>> So, today I tried to install the current version by installing Demeter,
>>>> following the procedure detailed at http://bruceravel.github.io/demeter/
>>>> <http://bruceravel.github.io/demeter/>.
>>>>
>>>> I?ve *carefully* installed Macports 2.3.3, i.e., installed Xcode 6.4,
>>>> agreed to Xcode licence, and installed Macports for OS X 10.10 Yosemite.
>>>> I runned the sudo port -v self update command
>>>> Then sudo port install xorg-server demeter
>>>> And port upgrade outdated to ensure everything is up to date
>>>> Plus, I have XQuartz 2.7.7 installed.
>>>>
>>>> Here is my problem.
>>>> Athena launches well from the Terminal (in home directory), I have the
>>>> main window (pearl5.22), I can import data or load former athena projects
>>>> etc, but there is no plot window. No error message shows up in the
>>>> terminal. However I can still produce a PNG of the plot I?m desperately
>>>> trying to see via Plots/Save last plot as...
>>>>
>>>> I?ve seen a similar thread concerning such an issue in OS X Mavericks but
>>>> couldn?t solve it from what was explained there (
>>>> http://millenia.cars.aps.anl.gov/pipermail/ifeffit/2014-January/011644.html
>>>> <
>>>> http://millenia.cars.aps.anl.gov/pipermail/ifeffit/2014-January/011644.html>).
>>>> I guess the issue comes from the DISPLAY environment but I don?t have any
>>>> clue to solve that.
>>>>
>>>> Thank you in advance for your help,
>>>> I think it may be useful for other users,
>>>>
>>>> Kind regards,
>>>>
>>>> R?mi
>>>>
>>>>
>>>> ???????????????????????????????????????
>>>> R?mi Belissont
>>>> Ph.D. Student | Universit? de Lorraine ? Labex R21
>>>>
>>>> GeoRessources
>>>> CNRS-UMR 7359, Facult? des Sciences
>>>> BP 70239, 54506 Vandoeuvre-l?s-Nancy Cedex, France
>>>> Phone +33 (0)3 83 68 47 14
>>>>
>>>> Centre de Recherches P?trographiques et G?ochimiques
>>>> CNRS-UMR 7358, 15 Rue Notre Dame des Pauvres
>>>> BP 20, 54501 Vandeuvre-l?s-Nancy Cedex, France
>>>>
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>>>>
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>>>>
>>>> End of Ifeffit Digest, Vol 151, Issue 22
>>>> ****************************************
>>>>
>>>>
>>>> --
>>>> Dr. Raimundo Lora Serrano
>>>> Institute of Physics (INFIS).
>>>> Federal University of Uberl?ndia - UFU
>>>> Ave Jo?o Naves de ?vila No. 2121. Room X20.
>>>> Campus Santa Monica. Uberl?ndia - MG.
>>>> Brazil
>>>> CEP: 38408-100
>>>> Phone: +55-34-3291 5923
>>>>
>>>>
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>>>>
>>>
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>
> --
> Dr. Raimundo Lora Serrano
> Institute of Physics (INFIS).
> Federal University of Uberl?ndia - UFU
> Ave Jo?o Naves de ?vila No. 2121. Room X20.
> Campus Santa Monica. Uberl?ndia - MG.
> Brazil
> CEP: 38408-100
> Phone: +55-34-3291 5923
>
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> ------------------------------
>
> Message: 2
> Date: Tue, 22 Sep 2015 15:53:31 -0400
> From: Bruce Ravel <bravel at bnl.gov>
> To: XAFS Analysis using Ifeffit <ifeffit at millenia.cars.aps.anl.gov>
> Subject: Re: [Ifeffit] No plot window in Athena/Demeter on Mac OS X
> Yosemite
> Message-ID: <5601B1BB.6080907 at bnl.gov>
> Content-Type: text/plain; charset=windows-1252; format=flowed
>
> On 09/22/2015 03:38 PM, Raimundo Lora Serrano wrote:
>> I just reinstalled ?xorg-server demeter?, now I get:
>> /private/tmp/com.apple.launchd.lXiE4HyZ2W/org.macports:0
>>
>> but there is no plot window. The problem remains.
>>
>
> I want to preface this by saying that I have no idea what the problem
> is and I do not own a Mac on which to investigate.
>
> That said, I can think of something you might look into.
>
> * Can you run gnuplot from the command line?
>
> * If so, what is the default terminal? To find out, do this at the
> gnuplot command line: "show terminal"
>
> * If the default terminal is something other than "X11", "wxt", or
> "qt", can you reset it? That is done at the gnuplot command line
> by, for instance, "set terminal wxt"
>
> * Can you make a plot? To find out, plot a sine wave at the gnuplot
> command line with "plot sin(x)"
>
> Basically, I am wondering if the problem is that gnuplot is not
> working or if the problem is that Demeter's communication with gnuplot
> is not working.
>
> B
>
>
> --
> Bruce Ravel ------------------------------------ bravel at bnl.gov
>
> National Institute of Standards and Technology
> Synchrotron Science Group at NSLS-II
> Building 535A
> Upton NY, 11973
>
> Homepage: http://bruceravel.github.io/home/
> Software: https://github.com/bruceravel
> Demeter: http://bruceravel.github.io/demeter/
>
>
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