[Ifeffit] No plot window in Athena/Demeter on Mac OS X Yosemite

Raimundo Lora Serrano rloraserrano at infis.ufu.br
Tue Sep 22 14:38:40 CDT 2015


Hi again,
I just reinstalled “xorg-server demeter”, now I get:
/private/tmp/com.apple.launchd.lXiE4HyZ2W/org.macports:0

but there is no plot window. The problem remains.


> Em 22/09/2015, à(s) 14:00, ifeffit-request at millenia.cars.aps.anl.gov escreveu:
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>   1. Re: No plot window in Athena/Demeter on Mac OS X Yosemite
>      (George Sterbinsky)
> 
> 
> ----------------------------------------------------------------------
> 
> Message: 1
> Date: Tue, 22 Sep 2015 10:05:29 -0500
> From: George Sterbinsky <GeorgeSterbinsky at u.northwestern.edu>
> To: XAFS Analysis using Ifeffit <ifeffit at millenia.cars.aps.anl.gov>
> Subject: Re: [Ifeffit] No plot window in Athena/Demeter on Mac OS X
> 	Yosemite
> Message-ID:
> 	<CALoY8Yx1Y4dodQ7ywgUFX5wuLEnauF9ib9LjJQLyi_Awf-T1Kg at mail.gmail.com>
> Content-Type: text/plain; charset="utf-8"
> 
> Hi All,
> 
> The result I get is
> /private/tmp/com.apple.launchd.a2i2wnuP2l/org.macosforge.xquartz:0 and
> Athena is working fine on my system.
> 
> George
> 
> On Tue, Sep 22, 2015 at 6:50 AM, Alison Tebo <agtebo at umich.edu> wrote:
> 
>> Hi Raimundo (and R?mi),
>> 
>> I'm not a pro here but, have you installed xorg-server? It seems like your
>> $DISPLAY variables are not being set correctly. The problem might be
>> XQuartz. The demeter build from Macports doesn't know to use that X windows
>> server (everything is installed in different places) and is looking for the
>> macports version. Your $DISPLAY variable should be something with
>> org.macports rather than org.macosforge.xquartz:0. FWIW, xorg-server is
>> maintained by and updated with XQuartz.
>> 
>> Good luck,
>> 
>> Alison
>> 
>> On Mon, Sep 21, 2015 at 10:15 PM, Raimundo Lora Serrano <
>> rloraserrano at infis.ufu.br> wrote:
>> 
>>> Dear all,
>>> 
>>> I have the same problems installing Athena/Demeter on Yosemite (10.10.5)
>>> as Remi.
>>> Also in my case (as for R?mi) - I use the R?mi?s message edited as
>>> required to my softwares? versions:
>>> 
>>>> Athena launches well from the Terminal, I have the
>>>> main window (perl5.22), I can import data or load former athena projects
>>>> etc, but there is no plot window. No error message shows up in the
>>>> terminal.
>>> 
>>> 
>>>> I?ve *carefully* installed Macports 2.3.3, i.e., installed Xcode Version 7.0 (7A220),
>>>> agreed to Xcode licence, and installed Macports for OS X 10.10 Yosemite.
>>>> I runned the "sudo port -v selfupdate" command
>>>> Then "sudo port install demeter-devel?
>>> 
>>>> And port upgrade outdated to ensure everything is up to date
>>>> Plus, I have XQuartz 2.7.7 installed.
>>> 
>>> 
>>> I also uninstalled and reinstalled macports (and Xcode, xquartz) but the
>>> problem remains.
>>> 
>>> By typing
>>> echo $DISPLAY
>>> /private/tmp/com.apple.launchd.RgzrDheMAp/org.macosforge.xquartz:0
>>> 
>>> Any guess?
>>> Many thanks in advance.
>>> Raimundo
>>> 
>>> 
>>> 
>>> 
>>> Em 21/09/2015, ?(s) 14:00, ifeffit-request at millenia.cars.aps.anl.gov
>>> escreveu:
>>> 
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>>> Today's Topics:
>>> 
>>>  1. No plot window in Athena/Demeter on Mac OS X Yosemite
>>>     (R?mi BELISSONT)
>>> 
>>> 
>>> ----------------------------------------------------------------------
>>> 
>>> Message: 1
>>> Date: Mon, 21 Sep 2015 14:57:34 +0200
>>> From: R?mi BELISSONT <remi.belissont at univ-lorraine.fr>
>>> To: ifeffit at millenia.cars.aps.anl.gov
>>> Subject: [Ifeffit] No plot window in Athena/Demeter on Mac OS X
>>> Yosemite
>>> Message-ID: <6D35429A-8B4F-42FA-BA4D-92407447F7A9 at univ-lorraine.fr>
>>> Content-Type: text/plain; charset="utf-8"
>>> 
>>> Hello,
>>> 
>>> I?m currently using Athena using the iXAFS 3.0.3 application, which is ?
>>> if I?ve well understood ? an old version no longer updated (
>>> http://cars9.uchicago.edu/ifeffit/Downloads <
>>> http://cars9.uchicago.edu/ifeffit/Downloads>).
>>> 
>>> So, today I tried to install the current version by installing Demeter,
>>> following the procedure detailed at http://bruceravel.github.io/demeter/
>>> <http://bruceravel.github.io/demeter/>.
>>> 
>>> I?ve *carefully* installed Macports 2.3.3, i.e., installed Xcode 6.4,
>>> agreed to Xcode licence, and installed Macports for OS X 10.10 Yosemite.
>>> I runned the sudo port -v self update command
>>> Then sudo port install xorg-server demeter
>>> And port upgrade outdated to ensure everything is up to date
>>> Plus, I have XQuartz 2.7.7 installed.
>>> 
>>> Here is my problem.
>>> Athena launches well from the Terminal (in home directory), I have the
>>> main window (pearl5.22), I can import data or load former athena projects
>>> etc, but there is no plot window. No error message shows up in the
>>> terminal. However I can still produce a PNG of the plot I?m desperately
>>> trying to see via Plots/Save last plot as...
>>> 
>>> I?ve seen a similar thread concerning such an issue in OS X Mavericks but
>>> couldn?t solve it from what was explained there (
>>> http://millenia.cars.aps.anl.gov/pipermail/ifeffit/2014-January/011644.html
>>> <
>>> http://millenia.cars.aps.anl.gov/pipermail/ifeffit/2014-January/011644.html>).
>>> I guess the issue comes from the DISPLAY environment but I don?t have any
>>> clue to solve that.
>>> 
>>> Thank you in advance for your help,
>>> I think it may be useful for other users,
>>> 
>>> Kind regards,
>>> 
>>> R?mi
>>> 
>>> 
>>> ???????????????????????????????????????
>>> R?mi Belissont
>>> Ph.D. Student | Universit? de Lorraine ? Labex R21
>>> 
>>> GeoRessources
>>> CNRS-UMR 7359, Facult? des Sciences
>>> BP 70239, 54506 Vandoeuvre-l?s-Nancy Cedex, France
>>> Phone +33 (0)3 83 68 47 14
>>> 
>>> Centre de Recherches P?trographiques et G?ochimiques
>>> CNRS-UMR 7358, 15 Rue Notre Dame des Pauvres
>>> BP 20, 54501 Vandeuvre-l?s-Nancy Cedex, France
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>>> ****************************************
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>>> 
>>> --
>>> Dr. Raimundo Lora Serrano
>>> Institute of Physics (INFIS).
>>> Federal University of Uberl?ndia - UFU
>>> Ave Jo?o Naves de ?vila No. 2121. Room X20.
>>> Campus Santa Monica. Uberl?ndia - MG.
>>> Brazil
>>> CEP: 38408-100
>>> Phone: +55-34-3291 5923
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--
Dr. Raimundo Lora Serrano
Institute of Physics (INFIS).
Federal University of Uberlândia - UFU
Ave João Naves de Ávila No. 2121. Room X20.
Campus Santa Monica. Uberlândia - MG.
Brazil
CEP: 38408-100
Phone: +55-34-3291 5923 

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