[Ifeffit] Macports ifeffit and Demeter Update

Jennifer Carter jwc137 at case.edu
Mon Jul 14 17:13:54 CDT 2014


Frank,

Looks like I have two versions of demeter-devel installed

sudo port -f activate demeter-devel

Password:

--->  The following versions of demeter-devel are currently installed:

--->      demeter-devel @0.9.20-2014-06-06_0

--->      demeter-devel @0.9.20pre10_0

Error: port activate failed: Registry error: Please specify the full
version as recorded in the port registry.


How do I specify a the full version?


Thanks

Jennifer
ᐧ

~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Jennifer L.W. Carter

Assistant Professor
Department of Materials Science and Engineering
Case Western Reserve University

*500B White Building*



*10900 Euclid Ave.Cleveland, OH 44106-4901phone: (216)
368-4214email: jennifer.w.carter at case.edu <jennifer.w.carter at case.edu>*


On Mon, Jul 14, 2014 at 3:00 PM, Schima, Frank <frank.schima at nist.gov>
wrote:

>  Your setup got munged somehow. You need to do what it says. Namely:
>
>  sudo port -f activate demeter-devel
>
>
>  -Frank
>
>  On Jul 14, 2014, at 3:55 PM, Jennifer Carter <jwc137 at case.edu> wrote:
>
>  when I run
>
>  *sudo port activate demeter-devel @0.9.20pre10_0*
> --->  Computing dependencies for demeter-devel
> --->  Activating demeter-devel @0.9.20pre10_0
> Error: org.macports.activate for port demeter-devel returned: Image error:
> /opt/local/lib/perl5/site_perl/5.16.3/darwin-thread-multi-2level/Demeter/Plugins/SpecFileLongLine.pm
> already exists and does not belong to a registered port.  Unable to
> activate port demeter-devel. Use 'port -f activate demeter-devel' to force
> the activation.
> Please see the log file for port demeter-devel for details:
>
> /opt/local/var/macports/logs/_opt_local_var_macports_registry_portfiles_demeter-devel-0.9.20pre10_0_54f3f2fd9281aa66df973ff2918ccf4354f1f896e5b2bc57d680266a42be52f1-5435/demeter-devel/main.log
> Warning: Failed to execute portfile from registry for demeter-devel
> @0.9.20pre10_0
> --->  Activating demeter-devel @0.9.20pre10_0
> Error: port activate failed: Image error:
> /opt/local/lib/perl5/site_perl/5.16.3/darwin-thread-multi-2level/Demeter/Plugins/SpecFileLongLine.pm
> already exists and does not belong to a registered port.  Unable to
> activate port demeter-devel. Use 'port -f activate demeter-devel' to force
> the activation.
>>
>  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> Jennifer L.W. Carter
>
> Assistant Professor
> Department of Materials Science and Engineering
> Case Western Reserve University
>
> *500B White Building*
>
>
>
> *10900 Euclid Ave. Cleveland, OH 44106-4901 phone: (216) 368-4214
> email: jennifer.w.carter at case.edu <jennifer.w.carter at case.edu>*
>
>
> On Mon, Jul 14, 2014 at 2:46 PM, Schima, Frank <frank.schima at nist.gov>
> wrote:
>
>> For whatever reason, you do not have any version of demeter-devel active.
>> You must activate the latest version as follows:
>>
>>  sudo port activate demeter-devel @0.9.20pre10_0
>>
>>
>>  -Frank
>>
>>  On Jul 14, 2014, at 3:43 PM, Jennifer Carter <jwc137 at case.edu> wrote:
>>
>>  Frank,
>>
>>  This is what I get for the following terminal inputs:
>>
>>  *169-231-92-234:~ jwc137$ port installed ifeffit p5.16-ifeffit
>> demeter-devel*
>> The following ports are currently installed:
>>   demeter-devel @0.9.20pre10_0
>>   demeter-devel @0.9.20-2014-06-06_0
>>   ifeffit @1.2.11c_0+gcc48
>>   ifeffit @1.2.13_0+gcc48 (active)
>>   p5.16-ifeffit @1.0.0_0
>>   p5.16-ifeffit @2_0 (active)
>> *169-231-92-234:~ jwc137$ ls -l /opt/local/bin/athena*
>> ls: /opt/local/bin/athena: No such file or directory
>> *169-231-92-234:~ jwc137$ ls -l /opt/local/bin/atoms*
>> ls: /opt/local/bin/atoms: No such file or directory
>> 169-231-92-234:~ jwc137$
>>>>
>>  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
>> Jennifer L.W. Carter
>>
>> Assistant Professor
>> Department of Materials Science and Engineering
>> Case Western Reserve University
>>
>> *500B White Building*
>>
>>
>>
>> *10900 Euclid Ave. Cleveland, OH 44106-4901 phone: (216) 368-4214
>> email: jennifer.w.carter at case.edu <jennifer.w.carter at case.edu>*
>>
>>
>> On Mon, Jul 14, 2014 at 2:00 PM, Schima, Frank <frank.schima at nist.gov>
>> wrote:
>>
>>>  Jennifer,
>>>
>>>
>>>  There is nothing else to do.
>>>
>>>  What is the output of the following 3 commands?
>>>
>>>  port installed ifeffit p5.16-ifeffit demeter-devel
>>>  ls -l /opt/local/bin/athena
>>> ls -l /opt/local/bin/atoms
>>>
>>>  Here is the my output (on 2 different computers):
>>>
>>>  $ port installed ifeffit p5.16-ifeffit demeter-devel
>>> The following ports are currently installed:
>>>   demeter-devel @0.9.20pre10_0 (active)
>>>   ifeffit @1.2.13_0+gcc48 (active)
>>>   p5.16-ifeffit @2_0 (active)
>>>
>>>  $ ls -l /opt/local/bin/athena
>>> lrwxr-xr-x  1 root  admin  43 Jul 14 10:53 /opt/local/bin/athena ->
>>> /opt/local/libexec/perl5.16/sitebin/dathena
>>>
>>>  $ ls -l /opt/local/bin/atoms
>>> lrwxr-xr-x  1 root  admin  45 Jul 14 10:53 /opt/local/bin/atoms ->
>>> /opt/local/libexec/perl5.16/sitebin/atoms-gui
>>>
>>>  As for that perl command, make sure you are using Macports perl.
>>>
>>>  $ which perl
>>> /opt/local/bin/perl
>>>
>>>
>>>  -Frank
>>>
>>>  On Jul 14, 2014, at 2:47 PM, Jennifer Carter <jwc137 at case.edu> wrote:
>>>
>>>  Frank,
>>>
>>>  I followed the instructions for updating a current version, but now
>>> when I type "athena" or "atoms" in the terminal I get the message "command
>>> not found" am I missing a step?
>>>
>>>  running  perl -e 'use Demeter; print $INC{"Demeter.pm"}, $/'
>>>
>>>  indicates that nothing was installed.
>>>
>>>  Thanks
>>> Jennifer
>>>>>>
>>>  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
>>> Jennifer L.W. Carter
>>>
>>> Assistant Professor
>>> Department of Materials Science and Engineering
>>> Case Western Reserve University
>>>
>>> *500B White Building*
>>>
>>>
>>>
>>> *10900 Euclid Ave. Cleveland, OH 44106-4901 phone: (216) 368-4214
>>> email: jennifer.w.carter at case.edu <jennifer.w.carter at case.edu>*
>>>
>>>
>>> On Mon, Jul 14, 2014 at 1:04 PM, Schima, Frank <frank.schima at nist.gov>
>>> wrote:
>>>
>>>> Mac OS X users,
>>>>
>>>>
>>>>  Thanks to help from Bruce Ravel and Matt Newville, I have updated
>>>> ifeffit and Demeter-devel in Macports to fix a number of problems reported.
>>>>
>>>>  To update from your current version type the following:
>>>>
>>>>  sudo port selfupdate
>>>> sudo port upgrade outdated
>>>>
>>>>  To install from scratch after installing Macports [1]:
>>>>
>>>>  sudo port selfupdate
>>>> sudo port install demeter-devel
>>>>
>>>>  When done, your should see the following ports installed:
>>>>
>>>>  $ port installed ifeffit p5.16-ifeffit demeter-devel
>>>> The following ports are currently installed:
>>>>   demeter-devel @0.9.20pre10_0 (active)
>>>>   ifeffit @1.2.13_0+gcc48 (active)
>>>>   p5.16-ifeffit @2_0 (active)
>>>>
>>>>  Please reply to the list (NOT to me directly) about how this works
>>>> for you.
>>>>
>>>>
>>>>  Cheers!
>>>> Frank
>>>>
>>>>  [1] <https://www.macports.org/install.php>
>>>>
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>>>>
>>>>
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