[Ifeffit] Macports ifeffit and Demeter Update

Jennifer Carter jwc137 at case.edu
Mon Jul 14 16:55:49 CDT 2014 

when I run

*sudo port activate demeter-devel @0.9.20pre10_0*

--->  Computing dependencies for demeter-devel

--->  Activating demeter-devel @0.9.20pre10_0

Error: org.macports.activate for port demeter-devel returned: Image error:
/opt/local/lib/perl5/site_perl/5.16.3/darwin-thread-multi-2level/Demeter/Plugins/SpecFileLongLine.pm
already exists and does not belong to a registered port.  Unable to
activate port demeter-devel. Use 'port -f activate demeter-devel' to force
the activation.

Please see the log file for port demeter-devel for details:


/opt/local/var/macports/logs/_opt_local_var_macports_registry_portfiles_demeter-devel-0.9.20pre10_0_54f3f2fd9281aa66df973ff2918ccf4354f1f896e5b2bc57d680266a42be52f1-5435/demeter-devel/main.log

Warning: Failed to execute portfile from registry for demeter-devel
@0.9.20pre10_0

--->  Activating demeter-devel @0.9.20pre10_0

Error: port activate failed: Image error:
/opt/local/lib/perl5/site_perl/5.16.3/darwin-thread-multi-2level/Demeter/Plugins/SpecFileLongLine.pm
already exists and does not belong to a registered port.  Unable to
activate port demeter-devel. Use 'port -f activate demeter-devel' to force
the activation.
ᐧ

~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Jennifer L.W. Carter

Assistant Professor
Department of Materials Science and Engineering
Case Western Reserve University

*500B White Building*



*10900 Euclid Ave.Cleveland, OH 44106-4901phone: (216)
368-4214email: jennifer.w.carter at case.edu <jennifer.w.carter at case.edu>*


On Mon, Jul 14, 2014 at 2:46 PM, Schima, Frank <frank.schima at nist.gov>
wrote:

>  For whatever reason, you do not have any version of demeter-devel active.
> You must activate the latest version as follows:
>
>  sudo port activate demeter-devel @0.9.20pre10_0
>
>
>  -Frank
>
>  On Jul 14, 2014, at 3:43 PM, Jennifer Carter <jwc137 at case.edu> wrote:
>
>  Frank,
>
>  This is what I get for the following terminal inputs:
>
>  *169-231-92-234:~ jwc137$ port installed ifeffit p5.16-ifeffit
> demeter-devel*
> The following ports are currently installed:
>   demeter-devel @0.9.20pre10_0
>   demeter-devel @0.9.20-2014-06-06_0
>   ifeffit @1.2.11c_0+gcc48
>   ifeffit @1.2.13_0+gcc48 (active)
>   p5.16-ifeffit @1.0.0_0
>   p5.16-ifeffit @2_0 (active)
> *169-231-92-234:~ jwc137$ ls -l /opt/local/bin/athena*
> ls: /opt/local/bin/athena: No such file or directory
> *169-231-92-234:~ jwc137$ ls -l /opt/local/bin/atoms*
> ls: /opt/local/bin/atoms: No such file or directory
> 169-231-92-234:~ jwc137$
>  ᐧ
>
>  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> Jennifer L.W. Carter
>
> Assistant Professor
> Department of Materials Science and Engineering
> Case Western Reserve University
>
> *500B White Building*
>
>
>
> *10900 Euclid Ave. Cleveland, OH 44106-4901 phone: (216) 368-4214
> email: jennifer.w.carter at case.edu <jennifer.w.carter at case.edu>*
>
>
> On Mon, Jul 14, 2014 at 2:00 PM, Schima, Frank <frank.schima at nist.gov>
> wrote:
>
>>  Jennifer,
>>
>>
>>  There is nothing else to do.
>>
>>  What is the output of the following 3 commands?
>>
>>  port installed ifeffit p5.16-ifeffit demeter-devel
>>  ls -l /opt/local/bin/athena
>> ls -l /opt/local/bin/atoms
>>
>>  Here is the my output (on 2 different computers):
>>
>>  $ port installed ifeffit p5.16-ifeffit demeter-devel
>> The following ports are currently installed:
>>   demeter-devel @0.9.20pre10_0 (active)
>>   ifeffit @1.2.13_0+gcc48 (active)
>>   p5.16-ifeffit @2_0 (active)
>>
>>  $ ls -l /opt/local/bin/athena
>> lrwxr-xr-x  1 root  admin  43 Jul 14 10:53 /opt/local/bin/athena ->
>> /opt/local/libexec/perl5.16/sitebin/dathena
>>
>>  $ ls -l /opt/local/bin/atoms
>> lrwxr-xr-x  1 root  admin  45 Jul 14 10:53 /opt/local/bin/atoms ->
>> /opt/local/libexec/perl5.16/sitebin/atoms-gui
>>
>>  As for that perl command, make sure you are using Macports perl.
>>
>>  $ which perl
>> /opt/local/bin/perl
>>
>>
>>  -Frank
>>
>>  On Jul 14, 2014, at 2:47 PM, Jennifer Carter <jwc137 at case.edu> wrote:
>>
>>  Frank,
>>
>>  I followed the instructions for updating a current version, but now
>> when I type "athena" or "atoms" in the terminal I get the message "command
>> not found" am I missing a step?
>>
>>  running  perl -e 'use Demeter; print $INC{"Demeter.pm"}, $/'
>>
>>  indicates that nothing was installed.
>>
>>  Thanks
>> Jennifer
>> ᐧ
>>
>>  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
>> Jennifer L.W. Carter
>>
>> Assistant Professor
>> Department of Materials Science and Engineering
>> Case Western Reserve University
>>
>> *500B White Building*
>>
>>
>>
>> *10900 Euclid Ave. Cleveland, OH 44106-4901 phone: (216) 368-4214
>> email: jennifer.w.carter at case.edu <jennifer.w.carter at case.edu>*
>>
>>
>> On Mon, Jul 14, 2014 at 1:04 PM, Schima, Frank <frank.schima at nist.gov>
>> wrote:
>>
>>> Mac OS X users,
>>>
>>>
>>>  Thanks to help from Bruce Ravel and Matt Newville, I have updated
>>> ifeffit and Demeter-devel in Macports to fix a number of problems reported.
>>>
>>>  To update from your current version type the following:
>>>
>>>  sudo port selfupdate
>>> sudo port upgrade outdated
>>>
>>>  To install from scratch after installing Macports [1]:
>>>
>>>  sudo port selfupdate
>>> sudo port install demeter-devel
>>>
>>>  When done, your should see the following ports installed:
>>>
>>>  $ port installed ifeffit p5.16-ifeffit demeter-devel
>>> The following ports are currently installed:
>>>   demeter-devel @0.9.20pre10_0 (active)
>>>   ifeffit @1.2.13_0+gcc48 (active)
>>>   p5.16-ifeffit @2_0 (active)
>>>
>>>  Please reply to the list (NOT to me directly) about how this works for
>>> you.
>>>
>>>
>>>  Cheers!
>>> Frank
>>>
>>>  [1] <https://www.macports.org/install.php>
>>>
>>> _______________________________________________
>>> Ifeffit mailing list
>>> Ifeffit at millenia.cars.aps.anl.gov
>>> http://millenia.cars.aps.anl.gov/mailman/listinfo/ifeffit
>>>
>>>
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