[Ifeffit] Column label issue
Vanamee, Eva
eva.vanamee at mssm.edu
Fri Apr 20 12:10:55 CDT 2012
Hi Bruce,
Somehow my earlier email bounced. I did try Erik's suggestion and renamed the columns with shorter names.
It all works fine now after giving short Ch1, Ch2,... names for the columns.
I am onto ARTEMIS and new issues. more soon....
On Apr 20, 2012, at 1:00 PM, <ifeffit-request at millenia.cars.aps.anl.gov>
wrote:
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> Today's Topics:
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> 1. Re: data processing - not all columns are visible (Bruce Ravel)
> 2. Path file does not exist (Yvonne Grunder)
> 3. Re: Path file does not exist (Bruce Ravel)
>
>
> ----------------------------------------------------------------------
>
> Message: 1
> Date: Thu, 19 Apr 2012 17:51:49 -0400
> From: Bruce Ravel <bravel at bnl.gov>
> To: XAFS Analysis using Ifeffit <ifeffit at millenia.cars.aps.anl.gov>
> Subject: Re: [Ifeffit] data processing - not all columns are visible
> Message-ID: <201204191751.49649.bravel at bnl.gov>
> Content-Type: Text/Plain; charset="iso-8859-1"
>
>
> Eva,
>
> It's been a busy week -- sorry for the pokey response.
>
> Erik is correct on all fronts -- the problem is the length of the line
> of column labels.
>
> One rather irksome work-around I can suggest is to remove that line
> with a text editor.
>
> The better work-around Erik alludes to is part of the newest version
> of my software. However, I do not yet have a Mac installer for the
> new version.
>
> B
>
>
> On Tuesday, April 17, 2012 10:20:30 pm Erik Farquhar wrote:
>> Hi Eva,
>>
>> It is also a good idea to mention that you are using OS X (as you told me).
>> Are you using the iXAFS versions of Athena/Artemis? If so, which version
>> #?
>>
>> To elaborate on Eva's e-mail, she collected data on NSLS X3B using a 31
>> element Ge detector. Datafiles are in the normal ASCII NSLS XDAC file
>> format, with the individual Ge channel labeled as long strings XIA01FeK
>> ... XIA31FeK. To date we've had no issues w/ these files using "classic
>> Horae Athena/Artemis" on Windows machines. With Demeter on Windows, I did
>> see the same problem as Eva, with the data file column selector dialog
>> only displaying the first 25 columns or so. Bruce came up with a
>> workaround at an early beta stage, so that long column name strings no
>> longer cause the column selector dialog to puke. As I recall from Bruce's
>> explanation, it had to do with IFEFFIT being unhappy with the long column
>> labels, although evidently something in the code for the older programs
>> overcame this limitation.
>>
>> If I had to guess, the OS X versions of "classic" Athena/Artemis are
>> running into this issue with IFEFFIT disliking the long column labels. I
>> don't have an OS X machine to test this, hence Eva's appeal to the wider
>> IFEFFIT community.
>>
>> Cheers,
>> Erik
>>
>> --
>> Erik Farquhar
>> Case Center for Synchrotron Biosciences
>> Brookhaven National Lab
>> NSLS, Building 725A-X3
>> Upton, NY 11973
>> efarquhar at bnl.gov
>> +1-631-344-8174
>>
>> ________________________________
>> From: Bruce Ravel <bravel at bnl.gov>
>> To: XAFS Analysis using Ifeffit <ifeffit at millenia.cars.aps.anl.gov>
>> Sent: Tuesday, April 17, 2012 5:55 PM
>> Subject: Re: [Ifeffit] data processing - not all columns are visible
>>
>> On Tuesday, April 17, 2012 04:53:08 pm Vanamee, Eva wrote:
>>> Greetings,
>>>
>>> I am using Artemis to read my data from a 31 channel detector. Only 25 of
>>> them are shown in the column chooser. How can I make all columns show?
>>
>> Eva,
>>
>> Can we see an example data file?
>>
>> B
>
> --
>
> Bruce Ravel ------------------------------------ bravel at bnl.gov
>
> National Institute of Standards and Technology
> Synchrotron Methods Group at NSLS --- Beamlines U7A, X24A, X23A2
> Building 535A
> Upton NY, 11973
>
> My homepage: http://xafs.org/BruceRavel
> EXAFS software: http://cars9.uchicago.edu/ifeffit/Demeter
>
>
> ------------------------------
>
> Message: 2
> Date: Fri, 20 Apr 2012 12:59:48 +0100
> From: Yvonne Grunder <yvonne.grunder at manchester.ac.uk>
> To: ifeffit at millenia.cars.aps.anl.gov
> Subject: [Ifeffit] Path file does not exist
> Message-ID: <4F914FB4.5080604 at manchester.ac.uk>
> Content-Type: text/plain; charset=ISO-8859-1; format=flowed
>
> Hallo,
>
> I have currently a problem with Artemis to fit my data. First, I import
> the paths from the Feff calculation and define my fitting parameters.
> Then I can run the fit exactly one time. If I try to fit the data a
> second time, I get the following error message:
> PATH: Au ( 9999 1 2.470 ---- @ Au
> @ 2 2 single scattering)
> The path file does not exist (perhaps the Feff
> calculation was not run).
> (and similar for all paths included...).
>
> Did anybody encounter a similar problem (I already reinstalled Demeter)?
>
> Best wishes,
> Yvonne
>
> --
> Dr Yvonne Grunder
> Chemistry Building - 6.09
> School of Chemistry
> The University of Manchester
> Manchester
> M13 9PL
> Tel.: +44 (0)161 306 4568
>
>
>
> ------------------------------
>
> Message: 3
> Date: Fri, 20 Apr 2012 08:25:03 -0400
> From: Bruce Ravel <bravel at bnl.gov>
> To: XAFS Analysis using Ifeffit <ifeffit at millenia.cars.aps.anl.gov>
> Subject: Re: [Ifeffit] Path file does not exist
> Message-ID: <201204200825.04031.bravel at bnl.gov>
> Content-Type: Text/Plain; charset="iso-8859-1"
>
>
> Yvonne,
>
> This is the sort of thing I cannot comment on without being able to
> reproduce it on my own computer. Can you send me the project file
> that demonstrates this problem?
>
> B
>
>
> On Friday, April 20, 2012 07:59:48 am Yvonne Grunder wrote:
>> Hallo,
>>
>> I have currently a problem with Artemis to fit my data. First, I import
>> the paths from the Feff calculation and define my fitting parameters.
>> Then I can run the fit exactly one time. If I try to fit the data a
>> second time, I get the following error message:
>> PATH: Au ( 9999 1 2.470 ---- @ Au
>> @ 2 2 single scattering)
>> The path file does not exist (perhaps the Feff
>> calculation was not run).
>> (and similar for all paths included...).
>>
>> Did anybody encounter a similar problem (I already reinstalled Demeter)?
>>
>> Best wishes,
>> Yvonne
>
> --
>
> Bruce Ravel ------------------------------------ bravel at bnl.gov
>
> National Institute of Standards and Technology
> Synchrotron Methods Group at NSLS --- Beamlines U7A, X24A, X23A2
> Building 535A
> Upton NY, 11973
>
> My homepage: http://xafs.org/BruceRavel
> EXAFS software: http://cars9.uchicago.edu/ifeffit/Demeter
>
>
> ------------------------------
>
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