[Ifeffit] iXAFS 3.0.3 for Mac OS X (Brandon Reese)

[Brandon Reese]

Hi Joel,

I did not test the python module. I  just tested the function of
Artemis/Athena from the iXAFS window and work great.  Thanks again for that!

I gave it try from both the iXAFS shell and regular bash terminal and got
this error (I am using 10.5.8)...

bash-3.2$ python
Python 2.5.4 (r254:67917, Dec 23 2008, 14:57:27)
[GCC 4.0.1 (Apple Computer, Inc. build 5363)] on darwin
Type "help", "copyright", "credits" or "license" for more information.
>>> import math
>>> import ifeffit
Traceback (most recent call last):
  File "<stdin>", line 1, in <module>
ImportError: No module named ifeffit
>>>

Sorry I can't add much else to this discussion, but I am happy to try things
out if people have ideas.

Brandon

On Thu, Sep 23, 2010 at 12:51 AM, Brugger, Joel (SAM) <
Joel.Brugger at samuseum.sa.gov.au> wrote:

>  Hi Brandon,
>
> Did you actually test the python module (i.e. Use python scripting to
> control arthemis?)
>
> On 10.6.4, I’ve obtain the following error:
>
> bash-3.2$ python
>   Python 2.6.1 (r261:67515, Dec 17 2009, 00:59:15)
>   [GCC 4.2.1 (Apple Inc. build 5646)] on darwin
>   Type "help", "copyright", "credits" or "license" for more information.
> >>> import math
> >>> import Ifeffit
> >>> iff = Ifeffit.Ifeffit()
>  failed to load ifeffit library  libifeffit.dylib
> /usr/local/share/ifeffit/:/opt/intel/Compiler/11.1/089/bin/intel64:/opt/local/bin:/opt/local/sbin:/Volumes/iXAFS3.0/iXAFS.app/Contents/Resources/local/bin:/opt/intel/Compiler/11.1/089/bin/intel64:/opt/local/bin:/opt/local/sbin:/opt/local/bin:/opt/local/sbin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/bin:/usr/X11/bin:/usr/local/lib:/Users/joelb/Desktop/FitYK/:/usr/local/lib/:/sw/lib/:/sw/include/readline/:/unix/Molecular
> Dynamics/moldy-2.16e:/Users/joelb/Public/XDS/XDS-OSX_Intel:/Users/joelb/Desktop/fdmnes:/Applications/iXAFS.app/Contents/Resources/local/bin:/Users/joelb/Desktop/Molecular
> Dynamics/nwchem-5.1-MACX-Darwin-gfortran-i386/bin/:/usr/local/lib:/Users/joelb/Desktop/FitYK/:/usr/local/lib/:/sw/lib/:/sw/include/readline/:/unix/Molecular
> Dynamics/moldy-2.16e:/Users/joelb/Public/XDS/XDS-OSX_Intel:/Users/joelb/Desktop/fdmnes:/Users/joelb/Desktop/Molecular
> Dynamics/nwchem-5.1-MACX-Darwin-gfortran-i386/bin/:/Applications/iXAFS.app/Contents/Resources/local/lib:/Applications/iXAFS.app/Contents/Resources/local/bin
> Traceback (most recent call last):
>   File "<stdin>", line 1, in <module>
>   File "/Library/Python/2.6/site-packages/Ifeffit/Ifeffit.py", line 80, in
> __init__
>     raise ImportError('Cannot load ifeffit library')
> ImportError: Cannot load ifeffit library
>
>
>
> . /Applications/iXAFS.app/Contents/Resources/local/bin/iff_init.sh is in my
> .profile and is loaded. Indeed, invoking libifeffit.dylib from the command
> line ‘works’:
>
> bash-3.2$ libifeffit.dylib
> bash:
> /Applications/iXAFS.app/Contents/Resources/local/lib/libifeffit.dylib:
> cannot execute binary file
>
> bash-3.2$ ls -l libifeffit.dylib
> -rwxr-xr-x  1 joelb  admin  1500676 12 Sep 00:07 libifeffit.dylib
>
> So close!
>
> Godd news last: we did not try python scripting on another machine, but
> IFEFFIT appears to run perfectly on 10.5 now – thanks Matt (champagne cork
> noise).
>
> Joel & Barbara
>
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