[Ifeffit] XasPerlBundle problems

Mon Sep 20 15:20:13 CDT 2010

Hi Matt,
Thanks for the suggestion. I tried removing the file
/usr/lib/perl5/5.10.X/CPAN/Config.pm, but no luck. Finally, I wrote my own
bash script which just went through each of the modules listed in
XasPerlBundle.pm and did
cpan -i $module
This seems to have worked fine, although I only tested startup of
artemis/athena.
Cheers,
Josh Kas

On Mon, Sep 20, 2010 at 10:00 AM, <ifeffit-request at millenia.cars.aps.anl.gov
> wrote:

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> Today's Topics:
>
>   1. iXAFS 3.0.3 for Mac OS X (Matt Newville)
>   2. Re: XasPerlBundle problems (Matt Newville)
>
>
> ----------------------------------------------------------------------
>
> Message: 1
> Date: Sun, 19 Sep 2010 12:46:31 -0500
> From: Matt Newville <newville at cars.uchicago.edu>
> To: XAFS Analysis using Ifeffit <ifeffit at millenia.cars.aps.anl.gov>
> Subject: [Ifeffit] iXAFS 3.0.3 for Mac OS X
> Message-ID:
>        <AANLkTin2OXBe79nM8=gr7sFY2CBGT=o5y8UAvfxfVUNV at mail.gmail.com>
> Content-Type: text/plain; charset=ISO-8859-1
>
> Hi All,
>
> OK, sorry for the delay, but I think that
>    http://cars9.uchicago.edu/~ifeffit/src/iXAFS3.0.3.dmg<http://cars9.uchicago.edu/%7Eifeffit/src/iXAFS3.0.3.dmg>
>
> should now work well for both Mac OS X 10.6 and 10.5.  That is, all
> the applications launch for me on a 10.6.5 machine and a 10.5.8
> machine, and seem to work as expected.  I'll try this on a PowerPC
> machine within the next couple days.
>
> I didn't include the Python module in this installer (I forgot), but put it
> at
>    http://cars9.uchicago.edu/~ifeffit/src/IfeffitPython-2.0.1.tar.gz<http://cars9.uchicago.edu/%7Eifeffit/src/IfeffitPython-2.0.1.tar.gz>
>
> This *should* work now, but then I thought the last one was going to
> work too.  It might be best to run this through the Ifeffit Shell, or
> to be extra careful in setting the environment to source the
> /..../iXAFS.app/Contents/Resources/local/bin/iff_init.sh
>
> As always, any feedback on what works and what doesn't would be
> greatly appreciated.
>
> Cheers,
>
> --Matt
>
>
> ------------------------------
>
> Message: 2
> Date: Sun, 19 Sep 2010 19:58:04 -0500
> From: Matt Newville <newville at cars.uchicago.edu>
> To: joshua jason kas <hebhop at u.washington.edu>, Bruce Ravel
>        <bravel at bnl.gov>,       XAFS Analysis using Ifeffit
>        <ifeffit at millenia.cars.aps.anl.gov>
> Subject: Re: [Ifeffit] XasPerlBundle problems
> Message-ID:
>        <AANLkTik7OwOBWoTb_V3GTG1i5sU+3_FLo+eicY5qP8aD at mail.gmail.com<AANLkTik7OwOBWoTb_V3GTG1i5sU%2B3_FLo%2BeicY5qP8aD at mail.gmail.com>
> >
> Content-Type: text/plain; charset=ISO-8859-1
>
> Hi Josh,
>
> > Hi Matt,
> > Thanks for the quick response. I did run the command from within the
> horae
> > install directory, and the file XasPerlBundle.pm is in the Bundle
> directory,
> > i.e.,
> >
> > verrocchio.phys #] pwd
> > /tmp/horae-070
> > verrocchio.phys #] ls
> > .   Bundle  INSTALL           aug    build_private  libperlxray
> > ..  CPAN    INSTALL_not_root  build  horae
> > verrocchio.phys #] ls Bundle/
> > .  ..  XasPerlBundle.pm
> > verrocchio.phys #] perl -MCPAN -e'install Bundle::XasPerlBundle'
> > CPAN: Storable loaded ok
> > Going to read /CPAN/Metadata
> >   Database was generated on Fri, 17 Sep 2010 18:28:36 GMT
> > CPAN: LWP::UserAgent loaded ok
> > Fetching with LWP:
> >   http://www.perl.com/CPAN/authors/01mailrc.txt.gz
> > Going to read /CPAN/source/authors/01mailrc.txt.gz
> > Fetching with LWP:
> >   http://www.perl.com/CPAN/modules/02packages.details.txt.gz
> > Going to read /CPAN/source/modules/02packages.details.txt.gz
> >   Database was generated on Sat, 18 Sep 2010 17:59:57 GMT
> >
> >   There's a new CPAN.pm version (v1.9402) available!
> >   [Current version is v1.7602]
> >   You might want to try
> >     install Bundle::CPAN
> >     reload cpan
> >   without quitting the current session. It should be a seamless upgrade
> >   while we are running...
> >
> > Fetching with LWP:
> >   http://www.perl.com/CPAN/modules/03modlist.data.gz
> > Going to read /CPAN/source/modules/03modlist.data.gz
> > Going to write /CPAN/Metadata
> > Warning: Cannot install Bundle::XasPerlBundle, don't know what it is.
> > Try the command
> >
> >     i /Bundle::XasPerlBundle/
> >
> > to find objects with matching identifiers.
>
> I had similar troubles on Mac OS X, I think possibly due to a bad
> CPAN/Config.pm file (that is, /usr/lib/perl5/5.10.X/CPAN/Config.pm).
> Among other things, I was also seeing CPAN trying to use /CPAN/ as its
> root directory -- that can't be very good.
>
> I think this could be related to the MyConfig.pm in Bruce's
> distribution, which has
>   'cpan_home' => File::Spec->catfile($ENV{__INSTALLING_BRPERL}, "CPAN"),
>
> but I haven't tested this carefully.
>
> Anyway, I would suggest blowing away the CPAN/CONFIG.pm file and
> starting over.  I think that will use a '.cpan' folder in your home
> directory for CPAN stuff, and that might fix it.
>
> If that doesn't help, hopefully Bruce will have more insight.
>
> --Matt
>
>
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