Dear George,

I'm afraid that you've uncovered a silly and known problem. (See https://trac.macports.org/ticket/48517 )

This bug is fixed in principle but not committed to the MacPorts repository. Last week there was some activity on this. Unfortunately, we'll need a MacPorts person with the right privileges to commit this change. I don't know how to push this forward.

If you are a MacPorts expert, then you can certainly grab the patch found at that ticket and apply it.  I'm afraid that's something that I don't know how to do without an hour of research, though.

I'm sorry about that, but we might have to be patient. I will investigate how one pushes the MacPorts committer group to commit their changes. Or, I mean, other people's changes.

Joe

---

From: George Sterbinsky <GeorgeSterbinsky@u.northwestern.edu>
Sent: Tuesday, August 11, 2015 8:27 PM
To: XAFS Analysis using Ifeffit
Subject: Re: [Ifeffit] MacPorts now contains Demeter 0.9.22 (and requires Perl 5.22)

 

Hi Joe,

Thanks for updating the package! I tried updating, first running "sudo port selfupdate" and then "sudo port update demeter-devel". I get the following error when I try the latter command:

bash-3.2$ sudo port upgrade demeter-devel
Password:
--->  Computing dependencies for ifeffit
--->  Verifying checksums for ifeffit
Error: Checksum (rmd160) mismatch for 1.2.final.tar.gz
Error: Checksum (sha256) mismatch for 1.2.final.tar.gz
Error: org.macports.checksum for port ifeffit returned: Unable to verify file checksums
Please see the log file for port ifeffit for details:
    /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_ifeffit/ifeffit/main.log
Error: Unable to upgrade port: 1
To report a bug, follow the instructions in the guide:
    http://guide.macports.org/#project.tickets
bash-3.2$

I've attached the log file as well. Any suggestions as to what else I might try?

Thank you,

George

On Tue, Aug 11, 2015 at 3:49 PM, Fowler, Joseph W. <joe.fowler@nist.gov> wrote:

Dear Bruce:

Wait a minute! In fact, I updated the Mac Ports package demeter within the last two weeks to use Demeter version 0.9.22. Mac users might want to use the latest version and should consider doing a "port self update && port upgrade demeter". 

Users who installed the development version port called demeter-devel will also land on 0.9.22 if they upgrade to the latest.

Note that the latest Mac Ports version is known as 0.9.22_1, where the revision number _1 corresponds to the upgrade from Perl 5.16 to 5.22 (which the MacPorts team is pushing on). For many users, there will be numerous dependency upgrades when you upgrade to 0.9.22_1, but I found they took only a few minutes in my particular case. This change in Perl versions could conceivably cause problems, but I haven't heard of any.

Best wishes,

Joe Fowler

(MacPorts maintainer for demeter)

---

From: Bruce Ravel <bravel@bnl.gov>
Sent: Tuesday, August 11, 2015 6:55 AM
To: XAFS Analysis using Ifeffit
Subject: Re: [Ifeffit] Energy shift after deglitch

 

I don't see the behavior you describe when I follow your recipe.
Perhaps it got fixed when I fixed this fellow's issue...?

http://millenia.cars.aps.anl.gov/pipermail/ifeffit/2015-May/012496.html

Of course, the Mac package is a fair bit behind at this point.

B

On 08/06/2015 06:10 PM, George Sterbinsky wrote:
> Hello,
>
> I am writing to report a bug in Athena running on OSX 10.10.4. Here are
> the steps to reproduce the problem. I'm not sure that all steps are
> necessary.
>
> 1. Open Athena and import the attached project, which contains two
> groups that are both marked.
> 2. Change plot range to plot from -30 to 30 eV.
> 3. Select the "deglitch and truncate" window.
> 4. Select group "Ref data.merge".
> 5. In deglitch many points, set margin to 0.05, Emin to -24, and Emax to
> -20.
> 6. Click replot margins.
> 7. Click remove points.
> 8. Click return to main window.
> 9. Click the derivative check box to plot marked groups as normalized
> derivative.
> 10. Click mu(E) button to plot marked groups as derivative of mu(E).
>
> When the last step is done the groups appear to shift with respect to
> each other. One can switch between Normalized and mu(E) and see the
> shift come and go.
>
> Thank you,
> George
>
>
>
> _______________________________________________
> Ifeffit mailing list
> Ifeffit@millenia.cars.aps.anl.gov
> http://millenia.cars.aps.anl.gov/mailman/listinfo/ifeffit
>


--
  Bruce Ravel  ------------------------------------ bravel@bnl.gov

  National Institute of Standards and Technology
  Synchrotron Science Group at NSLS-II
  Building 535A
  Upton NY, 11973

  Homepage:    http://bruceravel.github.io/home/
  Software:    https://github.com/bruceravel
  Demeter:     http://bruceravel.github.io/demeter/

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