Dear all,
I have been running the FEFF to simulate for XANES spectra for the cobalamins (Vitamin B12 cofactors). The issue of interest is between three compounds - Methylcobalamin (Me-Cbl), Cyanocobalamin (CN-Cbl) and Hydroxocobalamin (OH-Cbl).
Experimentally, Me-Cbl is supposed to the most reduced (in terms of the energy of onset of the rising absorption edge). OH-Cbl and CN-Cbl are supposed to be oxidized wrt Me-Cbl. (The official oxidation state of Cobalt for all the above three systems is +3).
However, the simulations do no reflect this and it consistently seems to predict a reduced absorption edge for both OH-Cbl and CN-Cbl, in comparison to Me-Cbl.
I checked the literature to confirm that the molecular coordinates that we are using as input (obtained after structure optimization using DFT - Gaussian09) is consistent with prior literature.
I am wondering if there is anything related to FEFF that I miss understanding, to note why this is occurring. I am attaching the input files for the three models (these are all truncated to reduce the computational expense on DFT optimization) and the experimental and FEFF simulated spectra that I had obtained.
Any help in understanding this seeming discrepancy is much appreciated.
Thanking you,
Ganesh