Frank,

This is what I get for the following terminal inputs:

169-231-92-234:~ jwc137$ port installed ifeffit p5.16-ifeffit demeter-devel

The following ports are currently installed:

  demeter-devel @0.9.20pre10_0

  demeter-devel @0.9.20-2014-06-06_0

  ifeffit @1.2.11c_0+gcc48

  ifeffit @1.2.13_0+gcc48 (active)

  p5.16-ifeffit @1.0.0_0

  p5.16-ifeffit @2_0 (active)

169-231-92-234:~ jwc137$ ls -l /opt/local/bin/athena

ls: /opt/local/bin/athena: No such file or directory

169-231-92-234:~ jwc137$ ls -l /opt/local/bin/atoms

ls: /opt/local/bin/atoms: No such file or directory

169-231-92-234:~ jwc137$ 

ᐧ

~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Jennifer L.W. Carter

Assistant Professor
Department of Materials Science and Engineering
Case Western Reserve University

500B White Building

10900 Euclid Ave.
Cleveland, OH 44106-4901
phone: (216) 368-4214
email: jennifer.w.carter@case.edu

On Mon, Jul 14, 2014 at 2:00 PM, Schima, Frank <frank.schima@nist.gov> wrote:

Jennifer,

There is nothing else to do. 

What is the output of the following 3 commands?

port installed ifeffit p5.16-ifeffit demeter-devel

ls -l /opt/local/bin/athena

ls -l /opt/local/bin/atoms

Here is the my output (on 2 different computers):

$ port installed ifeffit p5.16-ifeffit demeter-devel
The following ports are currently installed:
  demeter-devel @0.9.20pre10_0 (active)
  ifeffit @1.2.13_0+gcc48 (active)
  p5.16-ifeffit @2_0 (active)

$ ls -l /opt/local/bin/athena
lrwxr-xr-x  1 root  admin  43 Jul 14 10:53 /opt/local/bin/athena -> /opt/local/libexec/perl5.16/sitebin/dathena

$ ls -l /opt/local/bin/atoms
lrwxr-xr-x  1 root  admin  45 Jul 14 10:53 /opt/local/bin/atoms -> /opt/local/libexec/perl5.16/sitebin/atoms-gui

As for that perl command, make sure you are using Macports perl. 

$ which perl
/opt/local/bin/perl

-Frank

On Jul 14, 2014, at 2:47 PM, Jennifer Carter <jwc137@case.edu> wrote:

Frank,

I followed the instructions for updating a current version, but now when I type "athena" or "atoms" in the terminal I get the message "command not found" am I missing a step?

running  perl -e 'use Demeter; print $INC{"Demeter.pm"}, $/' 

indicates that nothing was installed.

Thanks

Jennifer

ᐧ

~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Jennifer L.W. Carter

Assistant Professor
Department of Materials Science and Engineering
Case Western Reserve University

500B White Building

10900 Euclid Ave.
Cleveland, OH 44106-4901
phone: (216) 368-4214
email: jennifer.w.carter@case.edu

On Mon, Jul 14, 2014 at 1:04 PM, Schima, Frank <frank.schima@nist.gov> wrote:

Mac OS X users,

Thanks to help from Bruce Ravel and Matt Newville, I have updated ifeffit and Demeter-devel in Macports to fix a number of problems reported. 

To update from your current version type the following:

sudo port selfupdate

sudo port upgrade outdated

To install from scratch after installing Macports [1]:

sudo port selfupdate

sudo port install demeter-devel

When done, your should see the following ports installed:

$ port installed ifeffit p5.16-ifeffit demeter-devel
The following ports are currently installed:
  demeter-devel @0.9.20pre10_0 (active)
  ifeffit @1.2.13_0+gcc48 (active)
  p5.16-ifeffit @2_0 (active)

Please reply to the list (NOT to me directly) about how this works for you. 

Cheers!

Frank

[1] <https://www.macports.org/install.php>

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